LiLabAtVT / DeepTELinks
Neural network classification of TE
☆89Updated 3 weeks ago
Alternatives and similar repositories for DeepTE
Users that are interested in DeepTE are comparing it to the libraries listed below
Sorting:
- This is the standalone version of the EviAnn pipeline☆97Updated last week
- ☆44Updated 8 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆57Updated 2 years ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 7 months ago
- A program for assessing the T2T genome continuity☆79Updated last week
- Pipeline to convert a haploid assembly into diploid☆100Updated 5 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆66Updated 4 years ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆80Updated 4 years ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆51Updated 5 years ago
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆48Updated last year
- A parallel wrapper for LTR_FINDER☆51Updated 3 months ago
- A organelle de novo genome assembly toolkit☆60Updated 4 months ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆63Updated 5 months ago
- BITACORA: A Bioinformatics tool for gene family annotation☆45Updated 3 weeks ago
- Call select base modifications in PacBio HiFi reads☆7Updated 4 months ago
- This is an archive version of old RepBase library (v20170127) for RepeatMasker.☆36Updated 4 years ago
- NLR-Annotator upload☆68Updated last year
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆48Updated last year
- ☆74Updated 3 months ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- Tiberius is a deep learning gene finder.☆65Updated last week
- A novel genome assembly pipeline based on deep learning☆62Updated 6 months ago
- ☆62Updated last week
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆40Updated 5 years ago
- DNA序列比对结果 可视化展示工具☆52Updated 2 years ago
- A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitoch…☆27Updated last month
- A tool for evaluate long-read de novo assembly results☆47Updated 9 months ago
- Mapping pipeline for data generated using Arima-HiC☆78Updated last year
- Show pangenome graphs in an easy way☆56Updated 2 years ago
- MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation☆70Updated 2 months ago