LiLabAtVT / DeepTELinks
Neural network classification of TE
☆96Updated 3 weeks ago
Alternatives and similar repositories for DeepTE
Users that are interested in DeepTE are comparing it to the libraries listed below
Sorting:
- A parallel wrapper for LTR_FINDER☆55Updated 7 months ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆83Updated 4 years ago
- This is the standalone version of the EviAnn pipeline☆127Updated last week
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆53Updated 5 years ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆70Updated last month
- NLR-Annotator upload☆73Updated 2 years ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69Updated 4 years ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆100Updated 8 months ago
- A program to call variants from genome alignment☆81Updated 6 months ago
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆102Updated last month
- ☆81Updated 2 weeks ago
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆50Updated last year
- DNA序列比对结果 可视化展示工具☆56Updated 2 years ago
- ☆82Updated last year
- AlleleFinder is a tool for identifying allele genes from polyploid genome.☆33Updated last month
- ☆77Updated 5 years ago
- use long sequenced reads to close gaps in assemblies☆39Updated 7 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago
- A novel genome assembly pipeline based on deep learning☆65Updated 10 months ago
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆81Updated last year
- TSEBRA: Transcript Selector for BRAKER☆48Updated 11 months ago
- Mapping pipeline for data generated using Arima-HiC☆80Updated last year
- SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …☆89Updated last year
- A organelle de novo genome assembly toolkit☆70Updated 8 months ago
- Reference-free profiling of polyploid genomes☆129Updated 3 weeks ago
- ☆44Updated 8 years ago
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆68Updated 7 months ago
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆40Updated 5 years ago
- Python package and CLI for whole-genome duplication related analyses. **This package is deprecated in favor of** https://github.com/heche…☆86Updated 2 years ago
- Genome annotation pipeline☆63Updated last year