LiLabAtVT / DeepTE

Related projects: ⓘ

• CSU-KangHu / HiTE
  High-precision TE Annotator
  ☆47Updated 2 weeks ago
• bichangwei / PMAT
  An efficient assembly tool for plant mitochondrial genome
  ☆26Updated 3 months ago
• abacus-gene / paml-tutorial
  paml documentation and tutorials
  ☆43Updated last year
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆46Updated 3 months ago
• steuernb / NLR-Annotator
  NLR-Annotator upload
  ☆56Updated last year
• DessimozLab / OMArk
  ☆53Updated 5 months ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆47Updated last year
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆75Updated 3 years ago
• phasegenomics / juicebox_scripts
  A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats
  ☆62Updated 3 years ago
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆31Updated last year
• JiaoLaboratory / CRAQ
  Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement
  ☆54Updated 8 months ago
• xzhub / LTR_Finder
  LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.
  ☆39Updated 8 months ago
• PacificBiosciences / jasmine
  Predict 5mC in PacBio HiFi reads
  ☆30Updated 11 months ago
• oushujun / LTR_FINDER_parallel
  A parallel wrapper for LTR_FINDER
  ☆46Updated 8 months ago
• rhysf / Synima
  Synteny Imager
  ☆60Updated 3 weeks ago
• fanagislab / GCE
  GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…
  ☆43Updated 4 years ago
• nanoporetech / duplex-tools
  Splitting of sequence reads by internal adapter sequence search
  ☆48Updated last year
• mapleforest / HaploMerger2
  ☆41Updated 7 years ago
• kjenike / panagram
  ☆56Updated 2 months ago
• chenlianfu / geta
  ☆66Updated 2 months ago
• 0xTCG / biser
  A fast tool for detecting and decomposing segmental duplications in genome assemblies
  ☆41Updated 7 months ago
• TF-Chan-Lab / panGraphViewer
  Show pangenome graphs in an easy way
  ☆52Updated 2 years ago
• sagnikbanerjee15 / Finder
  A fully automated gene annotator from RNA-Seq expression data
  ☆53Updated last year
• jamiemcg / BUSCO_phylogenomics
  BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
  ☆45Updated 7 months ago
• mahulchak / svmu
  A program to call variants from genome alignment
  ☆75Updated 6 months ago
• molevol-ub / bitacora
  BITACORA: A Bioinformatics tool for gene family annotation
  ☆40Updated 4 months ago
• YangJianshun / LINKVIEW2
  DNA序列比对结果 可视化展示工具
  ☆42Updated last year
• aubombarely / Organelle_PBA
  A software to assemble chloroplast and mitochodrial genomes using PacBio data
  ☆37Updated 4 years ago
• ChongLab / Inspector
  A tool for evaluate long-read de novo assembly results
  ☆40Updated 3 weeks ago