LiLabAtVT / DeepTELinks
Neural network classification of TE
☆96Updated 3 months ago
Alternatives and similar repositories for DeepTE
Users that are interested in DeepTE are comparing it to the libraries listed below
Sorting:
- A parallel wrapper for LTR_FINDER☆54Updated 5 months ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆83Updated 4 years ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆53Updated 5 years ago
- NLR-Annotator upload☆71Updated 2 years ago
- This is the standalone version of the EviAnn pipeline☆117Updated 2 weeks ago
- DNA序列比对结果 可视化展示工具☆54Updated 2 years ago
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆49Updated last year
- ☆79Updated 2 months ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆69Updated last week
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆68Updated 4 years ago
- ☆82Updated last year
- use long sequenced reads to close gaps in assemblies☆39Updated 7 years ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆98Updated 7 months ago
- ☆77Updated 5 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆58Updated 2 years ago
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆76Updated 2 weeks ago
- A novel genome assembly pipeline based on deep learning☆65Updated 9 months ago
- BITACORA: A Bioinformatics tool for gene family annotation☆47Updated 3 months ago
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆77Updated 11 months ago
- Genome annotation pipeline☆61Updated last year
- A program to call variants from genome alignment☆81Updated 4 months ago
- A tool for plotting CAFE5 gene family expansion/contraction result☆32Updated last year
- An efficient assembly tool for plant mitochondrial genome☆64Updated last year
- Algorithm For Gene Order Reconstruction in Ancestors☆77Updated last month
- Reference-free profiling of polyploid genomes☆125Updated 3 months ago
- ☆44Updated 8 years ago
- A organelle de novo genome assembly toolkit☆69Updated 6 months ago
- TransposonUltimate - a holistic set of tools for transposon identification☆84Updated 3 years ago
- Python package and CLI for whole-genome duplication related analyses. **This package is deprecated in favor of** https://github.com/heche…☆85Updated last year
- AlleleFinder is a tool for identifying allele genes from polyploid genome.☆31Updated this week