baozg / Potato_C88Links
Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning
☆29Updated 11 months ago
Alternatives and similar repositories for Potato_C88
Users that are interested in Potato_C88 are comparing it to the libraries listed below
Sorting:
- ☆35Updated 2 weeks ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆33Updated 10 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆67Updated 4 years ago
- Plant genome assembly and annotation pipeline using snakemake☆44Updated 2 months ago
- A tool for performing collinearity-incorporating homology inference☆32Updated last year
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C/CiFi or Hi-C.☆47Updated last month
- ☆30Updated 7 months ago
- BITACORA: A Bioinformatics tool for gene family annotation☆46Updated 2 months ago
- ☆40Updated 2 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆42Updated 10 months ago
- scripts for the project of seven thaliana genomes assembly☆40Updated 4 years ago
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- A tool for quick and accurate calculation of syntenic diversity.☆42Updated 6 months ago
- Centromics: visualing centromeres with multiple omics data☆24Updated 5 months ago
- AlleleFinder is a tool for identifying allele genes from polyploid genome.☆30Updated 7 months ago
- a Semi-automated pipeline for assembling T2T genome☆19Updated 2 months ago
- ☆42Updated last year
- Genome Annotation Pipeline☆36Updated 11 months ago
- ☆21Updated last year
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- ☆42Updated last year
- ☆41Updated 2 years ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆38Updated this week
- Dynamic Elongation of a Genome Assembly Path☆22Updated last year
- HiCAT new project☆28Updated 2 months ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆48Updated 3 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆30Updated 6 months ago
- Analyses of sex chromosome evolution in songbirds☆16Updated 6 years ago