baozg / Potato_C88Links
Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning
☆28Updated last year
Alternatives and similar repositories for Potato_C88
Users that are interested in Potato_C88 are comparing it to the libraries listed below
Sorting:
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C/CiFi or Hi-C.☆60Updated 3 months ago
- Plant genome assembly and annotation pipeline using snakemake☆47Updated 4 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69Updated 4 years ago
- ☆38Updated 2 months ago
- ☆30Updated 9 months ago
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆39Updated 2 weeks ago
- scripts for the project of seven thaliana genomes assembly☆41Updated 4 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆34Updated last year
- BITACORA: A Bioinformatics tool for gene family annotation☆49Updated 4 months ago
- A tool for performing collinearity-incorporating homology inference☆33Updated 2 years ago
- AlleleFinder is a tool for identifying allele genes from polyploid genome.☆31Updated 3 weeks ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- a Semi-automated pipeline for assembling T2T genome☆23Updated last month
- ☆42Updated last year
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆32Updated 8 months ago
- ☆40Updated 2 years ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆40Updated last week
- use long sequenced reads to close gaps in assemblies☆39Updated 7 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆42Updated last year
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- A shiny application to visualize MCscan result☆37Updated 3 years ago
- This is a method to find telomeres and centromeres in plants.☆42Updated 2 years ago
- A tool for quick and accurate calculation of syntenic diversity.☆42Updated 2 weeks ago
- Automated pipeline for running CoalHMM☆13Updated last year
- Portable solution to generate genome alignment chains using lastz☆59Updated 2 weeks ago
- HiCAT new project☆29Updated 4 months ago
- A novel genome assembly pipeline based on deep learning☆65Updated 10 months ago
- Dynamic Elongation of a Genome Assembly Path☆22Updated last year
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆48Updated last month
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆48Updated 2 weeks ago