tbenavi1 / KMC
Fast and frugal disk based k-mer counter
☆14Updated 4 years ago
Alternatives and similar repositories for KMC:
Users that are interested in KMC are comparing it to the libraries listed below
- Draw a dot plot from a paf alignment☆27Updated last month
- Genome alignment and synteny plots☆30Updated last year
- ☆27Updated last month
- ☆16Updated 2 years ago
- Toolkit for evolutionary analyses of linkage groups☆31Updated 9 months ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆29Updated 3 months ago
- Dynamic Elongation of a Genome Assembly Path☆21Updated last year
- A pipeline for scaffolding a genome assembly using Hi-C☆13Updated 2 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆27Updated 3 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Yet another Hi-C scaffolding tool☆19Updated 6 months ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 6 years ago
- Domain based annotation of transposable elements☆19Updated last week
- Reconstruction of ancestral genome maps☆16Updated 7 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- Centromics: visualing centromeres with multiple omics data☆22Updated 2 months ago
- ☆12Updated 2 years ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆30Updated 3 months ago
- ☆29Updated 4 months ago
- ☆19Updated 2 years ago
- ☆20Updated 9 months ago
- A Hi-C scaffolding method☆23Updated 3 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆18Updated 5 years ago
- ☆29Updated last month
- ☆27Updated 2 years ago
- R package to draw syntenic plots in 3 different styles☆40Updated last year
- Inferring natural selection by comparative population genomic analysis across species☆23Updated last year
- issues for semina "Data Visulization"☆13Updated last month
- ☆42Updated last year
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Updated 5 months ago