Alternatives and similar repositories for RAfilter

Users that are interested in RAfilter are comparing it to the libraries listed below

• TNTurnerLab / HAT
  HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
  ☆24Updated 2 months ago
• ekg / pafcheck
  PAF (pairwise alignment format) validator based on extended CIGAR strings
  ☆15Updated 5 months ago
• magspho / hifieval
  a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).
  ☆21Updated 2 years ago
• StephenHwang / MEMO
  MEMO: MEM-based pangenome indexing for k-mer queries
  ☆20Updated last year
• marschall-lab / strand-seq-graph-phasing
  ☆13Updated 8 months ago
• luntergroup / polyploid
  Benchmarking variant calling in polyploids
  ☆15Updated 4 years ago
• makovalab-psu / T2T_primate_XY
  ☆12Updated last year
• pangenome / genotypify
  Genotyping lots of samples with big pangenomes
  ☆11Updated 3 months ago
• XuepengSun / apple_diploid_genomes
  ☆10Updated 5 years ago
• jmonlong / manu-vggafannot
  Efficient indexing and querying of annotations in a pangenome graph
  ☆10Updated 3 months ago
• sinamajidian / phaseme
  A tool set to assess the quality of the per read phasing and reduce the errors.
  ☆13Updated 5 years ago
• LankyCyril / edgecase
  A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…
  ☆16Updated 2 years ago
• thecgs / quickprot
  QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics
  ☆16Updated 2 weeks ago
• mobinasri / secphase
  Phasing reads with secondary alignments
  ☆21Updated last year
• kehrlab / PopIns2
  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
  ☆26Updated last year
• ktan8 / nanopore_telomere_basecall
  ☆15Updated 2 years ago
• Adamtaranto / TIRmite
  Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.
  ☆10Updated this week
• ASLeonard / pandrawer
  Everything but the kitchen sink
  ☆11Updated 11 months ago
• phasegenomics / matlock
  Simple tools for working with Hi-C data
  ☆18Updated 7 years ago
• Maize-Genetics-and-Genomics-Database / PanEffect
  PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…
  ☆13Updated 2 years ago
• DecodeGenetics / LRcaller
  ☆16Updated 4 years ago
• Gaius-Augustus / clamsa
  ClaMSA (Classify Multiple Sequence Alignments).
  ☆13Updated last year
• collaborativebioinformatics / GeneVar
  ☆12Updated 4 years ago
• wjidea / defusion
  defusion
  ☆14Updated 4 years ago
• ekg / pafplot
  base-level dotplots from PAF alignments
  ☆30Updated 4 months ago
• SJTU-CGM / PPanG
  a precise pangenome browser combining linear and graph-based pan-genome
  ☆12Updated last year
• mcfrith / local-rearrangements
  ☆13Updated 8 years ago
• rlorigro / simple-dotplot
  Very simple and configurable all-in-one dotplot program
  ☆14Updated 2 years ago
• glogsdon1 / sunk-based_assembly
  ☆16Updated 4 years ago
• isugifNF / polishCLR
  A nextflow pipeline for polishing CLR assemblies
  ☆18Updated 2 years ago