Alternatives and similar repositories for RAfilter

Users that are interested in RAfilter are comparing it to the libraries listed below

• marschall-lab / strand-seq-graph-phasing
  ☆12Updated 3 months ago
• splicebox / PsiCLASS
  Simultaneous multi-sample transcript assembler for RNA-seq data
  ☆17Updated 9 months ago
• magspho / hifieval
  a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).
  ☆21Updated last year
• ekg / pafcheck
  PAF (pairwise alignment format) validator based on extended CIGAR strings
  ☆15Updated last month
• ktan8 / nanopore_telomere_basecall
  ☆14Updated 2 years ago
• TNTurnerLab / HAT
  HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
  ☆24Updated last year
• StephenHwang / MEMO
  MEMO: MEM-based pangenome indexing for k-mer queries
  ☆18Updated last year
• XuepengSun / apple_diploid_genomes
  ☆10Updated 5 years ago
• makovalab-psu / T2T_primate_XY
  ☆12Updated last year
• Adamtaranto / TIRmite
  Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.
  ☆10Updated 2 months ago
• LankyCyril / edgecase
  A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…
  ☆16Updated last year
• Gaius-Augustus / clamsa
  ClaMSA (Classify Multiple Sequence Alignments).
  ☆13Updated 10 months ago
• phasegenomics / matlock
  Simple tools for working with Hi-C data
  ☆18Updated 6 years ago
• luntergroup / polyploid
  Benchmarking variant calling in polyploids
  ☆15Updated 3 years ago
• hillerlab / IterativeErrorCorrection
  Iterative error correction of long reads
  ☆13Updated 2 years ago
• GillesFischerSorbonne / telofinder
  ☆12Updated last year
• LeilyR / Multi-genome-Reference
  A program to generate a graph which presents a simplified representation of several full length genomes
  ☆13Updated 7 years ago
• SJTU-CGM / PPanG
  a precise pangenome browser combining linear and graph-based pan-genome
  ☆11Updated last year
• almeidasilvaf / HybridExpress
  An R package for comparative transcriptomic analyses of hybrids and their progenitors
  ☆14Updated last year
• wjidea / defusion
  defusion
  ☆14Updated 4 years ago
• bioinfo-ut / GeneToCN
  Gene copy number prediction from k-mer frequencies
  ☆13Updated last year
• ekg / pafplot
  base-level dotplots from PAF alignments
  ☆26Updated last week
• DessimozLab / OMAnnotator
  Consensus genome annotation using OMA
  ☆26Updated 3 months ago
• DecodeGenetics / LRcaller
  ☆16Updated 3 years ago
• ERGA-consortium / pipelines
  ☆17Updated 3 months ago
• marbl / training
  Genome Assembly 102
  ☆15Updated 5 months ago
• mcfrith / local-rearrangements
  ☆12Updated 7 years ago
• Maize-Genetics-and-Genomics-Database / PanEffect
  PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…
  ☆13Updated last year
• arangrhie / T2T-HG002Y
  Code repository for the T2T-Y paper
  ☆24Updated 2 years ago
• jmonlong / manu-vggafannot
  Efficient indexing and querying of annotations in a pangenome graph
  ☆10Updated 3 months ago