Alternatives and similar repositories for RAfilter:

Users that are interested in RAfilter are comparing it to the libraries listed below

• ekg / pafcheck
  PAF (pairwise alignment format) validator based on extended CIGAR strings
  ☆14Updated 4 months ago
• makovalab-psu / T2T_primate_XY
  ☆13Updated 7 months ago
• magspho / hifieval
  a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).
  ☆21Updated last year
• XuepengSun / apple_diploid_genomes
  ☆10Updated 4 years ago
• sc-zhang / T2Tools
  T2Tools is a toolset contains several tools for plant T2T assembly, and it is under development.
  ☆11Updated 4 months ago
• phasegenomics / matlock
  Simple tools for working with Hi-C data
  ☆16Updated 6 years ago
• TNTurnerLab / HAT
  HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
  ☆23Updated 9 months ago
• Wenfei-Xian / TIPP
  Telomere local assembly, Improved whole genome polish, and Plastid assembly
  ☆15Updated this week
• mobinasri / secphase
  Phasing reads with secondary alignments
  ☆17Updated last month
• glogsdon1 / sunk-based_assembly
  ☆15Updated 3 years ago
• T2T-apes / ape_pangenome
  pangenome analyses for complete genomes of great apes (and gibbon)
  ☆17Updated 3 months ago
• wtsi-hpag / scaffHiC
  Pipeline for genome scaffolding by modelling distributions of HiC pairs
  ☆10Updated 2 years ago
• marbl / training
  Genome Assembly 102
  ☆13Updated this week
• pdishuck / GAVISUNK
  Genome Assembly Validation via Inter-SUNK distances in ONT reads
  ☆11Updated last year
• MoinSebi / gfa2bin
  ☆14Updated last month
• cmdcolin / jbrowse-plugin-mafviewer
  A viewer for multiple alignment format (MAF) files in JBrowse 2
  ☆10Updated last week
• ktan8 / nanopore_telomere_basecall
  ☆14Updated last year
• LeilyR / Multi-genome-Reference
  A program to generate a graph which presents a simplified representation of several full length genomes
  ☆12Updated 6 years ago
• mcfrith / local-rearrangements
  ☆12Updated 7 years ago
• wjidea / defusion
  defusion
  ☆14Updated 3 years ago
• ekg / fastix
  Prefix-renaming FASTA records really fast.
  ☆16Updated 6 months ago
• rlorigro / simple-dotplot
  Very simple and configurable all-in-one dotplot program
  ☆12Updated last year
• StephenHwang / MEMO
  MEMO: MEM-based pangenome indexing for k-mer queries
  ☆18Updated 7 months ago
• njdbickhart / GoatAssemblyScripts
  A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly
  ☆12Updated 7 years ago
• luntergroup / polyploid
  Benchmarking variant calling in polyploids
  ☆13Updated 3 years ago
• LankyCyril / edgecase
  A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…
  ☆15Updated 11 months ago
• yangli557 / AnnoSINE
  SINE annotation tool for plant genomes
  ☆17Updated 11 months ago
• kammoji / gapFinisher
  A reliable gap filling pipeline for draft genomes
  ☆11Updated 5 years ago
• arzwa / Beluga.jl
  Statistical analysis of gene family evolution using phylogenetic birth-death processes and WGD inference using rjMCMC
  ☆9Updated 4 years ago