A filter algorithm with program to filter an alignment or mapping file
☆12May 15, 2025Updated last year
Alternatives and similar repositories for RAfilter
Users that are interested in RAfilter are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16Apr 3, 2023Updated 3 years ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆17Sep 17, 2025Updated 10 months ago
- An effective alignment tool for long noisy 3C data (e.g. Pore-C and C-walk)☆16Oct 23, 2024Updated last year
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆20Dec 5, 2023Updated 2 years ago
- Robust Eukaryotic Annotation Toolkit☆17Feb 28, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆33Jan 3, 2025Updated last year
- Some components that speed up and reduce resource cost for original ALLHiC☆15Jun 21, 2025Updated last year
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Nov 23, 2025Updated 8 months ago
- Haplotype aware de novo assembly of diploid genome from long reads☆54Mar 16, 2022Updated 4 years ago
- ☆42May 19, 2025Updated last year
- SRY: an effective method for sorting long-read of sex-limited (Y or W) chromosome.☆19Aug 1, 2023Updated 2 years ago
- SV calling for diploid assemblies☆32Mar 22, 2024Updated 2 years ago
- ☆10Jun 13, 2020Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 3 years ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69May 22, 2021Updated 5 years ago
- ☆15Apr 16, 2026Updated 3 months ago
- Repeat-aware polishing genomes assembled using HiFi long reads☆105Apr 7, 2026Updated 3 months ago
- Code repository for the T2T-Y paper☆24Jul 11, 2023Updated 3 years ago
- ☆16Apr 9, 2021Updated 5 years ago
- ☆59Dec 12, 2023Updated 2 years ago
- ☆42Oct 6, 2025Updated 9 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆33Apr 7, 2025Updated last year
- An ultra-fast gzip file tools☆28Jun 23, 2026Updated last month
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- Very simple and configurable all-in-one dotplot program☆14Apr 1, 2023Updated 3 years ago
- Variant Calling for the HPRC2☆16May 26, 2026Updated last month
- ☆17Mar 2, 2024Updated 2 years ago
- Evaluate variant calls and its combination with k-mer multiplicity☆70Dec 2, 2022Updated 3 years ago
- Tools for working with agp files☆19Jun 26, 2025Updated last year
- Draw a dot plot from a paf alignment☆45May 9, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Simple tools for working with Hi-C data☆20Dec 19, 2018Updated 7 years ago
- A tool for performing collinearity-incorporating homology inference☆34Jul 17, 2026Updated last week
- Nextflow pipeline for scaffolding genome assemblies with Hi-C reads☆16Nov 5, 2025Updated 8 months ago
- ☆18Jan 29, 2025Updated last year
- High throughput python tool for mining and analysis of gene duplications.☆16Mar 24, 2026Updated 4 months ago
- ☆45Dec 11, 2025Updated 7 months ago
- An easy-to-use python package can be used for genomic visual analysis☆22Apr 20, 2024Updated 2 years ago