A filter algorithm with program to filter an alignment or mapping file
☆12May 15, 2025Updated 10 months ago
Alternatives and similar repositories for RAfilter
Users that are interested in RAfilter are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16Apr 3, 2023Updated 2 years ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆15Sep 17, 2025Updated 6 months ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Dec 5, 2023Updated 2 years ago
- Robust Eukaryotic Annotation Toolkit☆17Feb 28, 2025Updated last year
- An effective alignment tool for long noisy 3C data (e.g. Pore-C and C-walk)☆15Oct 23, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆32Jan 3, 2025Updated last year
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- Some components that speed up and reduce resource cost for original ALLHiC☆14Jun 21, 2025Updated 9 months ago
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Nov 23, 2025Updated 4 months ago
- Haplotype aware de novo assembly of diploid genome from long reads☆54Mar 16, 2022Updated 4 years ago
- Draw a dot plot from a paf alignment☆38Sep 18, 2025Updated 6 months ago
- ☆42May 19, 2025Updated 10 months ago
- SRY: an effective method for sorting long-read of sex-limited (Y or W) chromosome.☆19Aug 1, 2023Updated 2 years ago
- ☆10Jun 13, 2020Updated 5 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Genome alignment and synteny plots☆34Jun 5, 2023Updated 2 years ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69May 22, 2021Updated 4 years ago
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on 3C-based data (Pore-C, CiFi, Hi-C,Omni-C).☆90Jan 25, 2026Updated 2 months ago
- ☆16Dec 25, 2024Updated last year
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- SV calling for diploid assemblies☆31Mar 22, 2024Updated 2 years ago
- Repeat-aware polishing genomes assembled using HiFi long reads☆98Nov 12, 2025Updated 4 months ago
- ☆16Apr 9, 2021Updated 4 years ago
- Code repository for the T2T-Y paper☆24Jul 11, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆38Oct 6, 2025Updated 5 months ago
- ☆59Dec 12, 2023Updated 2 years ago
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- An ultra-fast gzip file tools☆27Apr 25, 2024Updated last year
- ☆31Apr 7, 2025Updated 11 months ago
- Simple tools for working with Hi-C data☆18Dec 19, 2018Updated 7 years ago
- several scripts for bioinformatics☆24Nov 27, 2025Updated 3 months ago
- Evaluate variant calls and its combination with k-mer multiplicity☆67Dec 2, 2022Updated 3 years ago
- Nextflow pipeline for scaffolding genome assemblies with Hi-C reads☆16Nov 5, 2025Updated 4 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Tools for working with agp files☆19Jun 26, 2025Updated 8 months ago
- ☆18Jan 29, 2025Updated last year
- An easy-to-use python package can be used for genomic visual analysis☆21Apr 20, 2024Updated last year
- A tool for performing collinearity-incorporating homology inference☆33Oct 7, 2023Updated 2 years ago
- ☆27Aug 29, 2025Updated 6 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Apr 23, 2025Updated 11 months ago
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 2 years ago