CMB-BNU / PloidyFrost
reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph
☆16Updated last year
Related projects ⓘ
Alternatives and complementary repositories for PloidyFrost
- Automatic evaluation of HGTs☆25Updated 2 months ago
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Updated 6 years ago
- Centromics: visualing centromeres with multiple omics data☆17Updated 10 months ago
- ☆26Updated 6 months ago
- ☆36Updated last year
- Centromics: visualing centromeres with multiple omics data☆22Updated 2 weeks ago
- ☆20Updated 3 months ago
- ☆24Updated 10 months ago
- Genome Annotation Pipeline☆32Updated 3 months ago
- Diploid genome assembly analysis tools☆13Updated 2 months ago
- R package to draw syntenic plots in 3 different styles☆39Updated 11 months ago
- Likelihood-based Selective Sweep Detection☆36Updated last year
- Chromosome-level synteny plotting using orthologous regions☆28Updated 2 months ago
- ☆23Updated 2 months ago
- A genome assembly assessment pipeline.☆36Updated last year
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆25Updated last month
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆44Updated 5 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆34Updated 2 months ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆28Updated last year
- R package for comparison of synteny conservation at the genome-wide scale.☆13Updated 5 months ago
- ☆11Updated 5 years ago
- ☆18Updated 2 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆24Updated 8 months ago
- ☆29Updated 2 weeks ago
- A shiny application to visualize MCscan result☆33Updated 2 years ago
- Domain based annotation of transposable elements☆19Updated last month
- Analyses of sex chromosome evolution in songbirds☆15Updated 5 years ago
- Reconstruction of ancestral genome maps☆16Updated 6 years ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆34Updated last year