reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph
☆23Jul 26, 2023Updated 3 years ago
Alternatives and similar repositories for PloidyFrost
Users that are interested in PloidyFrost are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Sep 23, 2026Updated last month
- ☆36Jun 24, 2026Updated 4 months ago
- Ploidy agnostic phasing pipeline and algorithm☆51Jan 3, 2024Updated 2 years ago
- Phylogenomic species tree inference under gene duplication and loss☆13Sep 20, 2026Updated last month
- ☆23Aug 8, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆77Jun 4, 2026Updated 5 months ago
- A statistical framework for ploidy estimation using NGS short-read data☆67Apr 5, 2018Updated 8 years ago
- A comprehensive C++ telomere annotation tool for genome assemblies and reads.☆20Oct 2, 2026Updated last month
- An efficient assembly tool for plant mitochondrial genome☆72May 31, 2024Updated 2 years ago
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆305Sep 23, 2026Updated last month
- Code for assembly approach presented in "Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspri…☆15Nov 20, 2023Updated 2 years ago
- The `awk` script to calculate population stats in VCF files: convenient, simple, flexible☆33Aug 18, 2026Updated 2 months ago
- Dynamic Elongation of a Genome Assembly Path☆32Oct 26, 2026Updated last week
- Fast and frugal disk based k-mer counter☆15Apr 1, 2021Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆38Apr 20, 2026Updated 6 months ago
- ☆16Apr 3, 2023Updated 3 years ago
- ☆28Mar 23, 2024Updated 2 years ago
- Annotation Extraction Genomic Integration Suite (AEGIS) is a powerful and flexible Python-based suite for the manipulation, analysis, and…☆16Updated this week
- A genome assembly assessment pipeline.☆39Jun 5, 2026Updated 5 months ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆39Mar 5, 2023Updated 3 years ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆17Sep 17, 2025Updated last year
- ☆34Apr 7, 2025Updated last year
- Reduction of Althaps and Duplicate Contigs for Improved Downstream Analysis☆21Oct 2, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆30Jul 16, 2022Updated 4 years ago
- A program for assessing the T2T genome continuity and completeness☆98Updated this week
- Some components that speed up and reduce resource cost for original ALLHiC☆15Jun 21, 2025Updated last year
- Differential k-mer analysis☆42Jan 29, 2024Updated 2 years ago
- A tool for pangenome graph-based phased diploid genome inference.☆10Sep 19, 2026Updated last month
- An ultra-fast gzip file tools☆29Jun 23, 2026Updated 4 months ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆32Updated this week
- a fork of the gap-closing pipeline PBJelly☆15Jan 7, 2019Updated 7 years ago
- GeneMiner2 is an enhanced version of our previous developments Easy353 and GeneMiner☆20Oct 11, 2026Updated 3 weeks ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Repeat-aware polishing genomes assembled using HiFi long reads☆106Apr 7, 2026Updated 6 months ago
- PhaseGrass, a reference-based phasing workflow generating chromosome-level haplotype-resolved diploid assembly for highly heterozygous ge…☆18Jun 2, 2026Updated 5 months ago
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Feb 26, 2026Updated 8 months ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆150Apr 13, 2026Updated 6 months ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- This repository contains the `a-liner` script and sample data.☆28Aug 6, 2026Updated 3 months ago
- A filter algorithm with program to filter an alignment or mapping file☆13May 15, 2025Updated last year