CMB-BNU / PloidyFrostLinks
reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph
☆18Updated 2 years ago
Alternatives and similar repositories for PloidyFrost
Users that are interested in PloidyFrost are comparing it to the libraries listed below
Sorting:
- Dynamic Elongation of a Genome Assembly Path☆25Updated last month
- ☆26Updated 2 months ago
- ☆33Updated 10 months ago
- Robust identification of orthologous Synteny with the Orthology Index☆37Updated last week
- ☆21Updated last year
- A genome assembly assessment pipeline.☆38Updated 2 years ago
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Updated last year
- Domain based annotation of transposable elements☆21Updated 3 months ago
- ☆29Updated 2 weeks ago
- ☆31Updated 9 months ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Updated last year
- ☆29Updated 3 years ago
- Reconstruction of ancestral genome maps☆16Updated 7 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆34Updated 2 months ago
- Genome alignment and synteny plots☆33Updated 2 years ago
- ☆41Updated 2 years ago
- Toolkit for evolutionary analyses of linkage groups☆33Updated last year
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 11 months ago
- This is a method to find telomeres and centromeres in plants.☆42Updated 2 years ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆32Updated 7 months ago
- A tool for performing collinearity-incorporating homology inference☆33Updated 2 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Updated 4 years ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- R package to draw syntenic plots in 3 different styles☆44Updated 5 months ago
- ☆27Updated 2 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 3 years ago
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Updated 7 years ago
- A pipeline for genomic variant detection with genome assemblies at population scale☆36Updated 7 months ago
- ☆32Updated last year
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago