xiaochuanle / FalignLinks
An effective alignment tool for long noisy 3C data (e.g. Pore-C and C-walk)
☆12Updated 11 months ago
Alternatives and similar repositories for Falign
Users that are interested in Falign are comparing it to the libraries listed below
Sorting:
- ☆14Updated last year
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆19Updated 5 years ago
- ☆30Updated 9 months ago
- A pipeline for identifying conserved topologically associating domain boundaries among multiple species.☆17Updated 3 months ago
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C/CiFi or Hi-C.☆60Updated 3 months ago
- ☆45Updated 7 months ago
- ☆42Updated last year
- Integrate multiple genome assemblies into a pangenome graph☆34Updated 3 years ago
- A gene fusion caller for long-read transcriptome sequencing data.☆20Updated last year
- ☆36Updated 2 months ago
- ☆38Updated this week
- A tool for performing collinearity-incorporating homology inference☆33Updated 2 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆32Updated 8 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆43Updated 3 months ago
- Kmer Analysis of Pileups for Genotyping☆32Updated this week
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 5 years ago
- ☆15Updated 3 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆43Updated 11 months ago
- ☆16Updated 5 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Snakemake pipeline to analyze transposable element 'omics data.☆27Updated last week
- EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…☆24Updated 2 years ago
- Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning☆28Updated last year
- ☆16Updated 2 years ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated last year
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- ☆31Updated 5 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆68Updated 3 months ago
- The tools are used for displaying hic signal of genome☆24Updated 4 years ago
- Draw a dot plot from a paf alignment☆34Updated 3 weeks ago