xiaochuanle / FalignLinks
An effective alignment tool for long noisy 3C data (e.g. Pore-C and C-walk)
☆12Updated 10 months ago
Alternatives and similar repositories for Falign
Users that are interested in Falign are comparing it to the libraries listed below
Sorting:
- ☆14Updated last year
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆19Updated 5 years ago
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C/CiFi or Hi-C.☆57Updated 2 months ago
- ☆30Updated 8 months ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- ☆42Updated last year
- ☆45Updated 7 months ago
- Draw a dot plot from a paf alignment☆34Updated last month
- ☆16Updated 2 years ago
- ☆17Updated 8 months ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Updated 4 years ago
- Variant annotation and merging pipeline☆39Updated last month
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- A tool for performing collinearity-incorporating homology inference☆32Updated last year
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 5 years ago
- ☆31Updated 5 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆43Updated 10 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated 2 months ago
- Detection and genotyping of structural variants☆18Updated 5 months ago
- A pipeline for identifying conserved topologically associating domain boundaries among multiple species.☆16Updated 3 months ago
- ☆31Updated last year
- conserved non-coding sequence☆14Updated 3 years ago
- This is a method to find telomeres and centromeres in plants.☆41Updated 2 years ago
- scripts for the project of seven thaliana genomes assembly☆41Updated 4 years ago
- Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning☆28Updated last year
- A battery of methylation tools for PacBio HiFi reads☆41Updated 2 weeks ago
- test repository☆29Updated 2 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- The tools are used for displaying hic signal of genome☆24Updated 4 years ago
- EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…☆24Updated 2 years ago