A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
☆54Sep 16, 2026Updated last week
Alternatives and similar repositories for teloclip
Users that are interested in teloclip are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16Jul 25, 2021Updated 5 years ago
- use long sequenced reads to close gaps in assemblies☆40Sep 4, 2018Updated 8 years ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆16Apr 22, 2024Updated 2 years ago
- ☆42May 19, 2025Updated last year
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆13Nov 6, 2025Updated 10 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆70May 22, 2021Updated 5 years ago
- Genome haplotype assembly and assessment method☆12Nov 24, 2023Updated 2 years ago
- Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.☆10Updated this week
- This is a method to find telomeres and centromeres in plants.☆43Jun 17, 2023Updated 3 years ago
- Centromics: visualing centromeres with multiple omics data☆27Mar 4, 2025Updated last year
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆14Mar 11, 2019Updated 7 years ago
- ☆28May 12, 2026Updated 4 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆37Jun 6, 2022Updated 4 years ago
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Nov 23, 2025Updated 10 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- a fork of the gap-closing pipeline PBJelly☆15Jan 7, 2019Updated 7 years ago
- A comprehensive telomere annotation tool for genome assemblies and graphs.☆18Sep 16, 2026Updated last week
- ggideogram is a ggplot2 extension package for drawing chromosome diagrams☆19Nov 29, 2024Updated last year
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆12Dec 7, 2022Updated 3 years ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆250Sep 6, 2024Updated 2 years ago
- A genome-scale, fast, and precise segmental duplications mapping tool☆36Sep 11, 2024Updated 2 years ago
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on 3C-based data (Pore-C, CiFi, Hi-C, Omni-C).☆111Jul 23, 2026Updated 2 months ago
- A program for assessing the T2T genome continuity and completeness☆97Sep 8, 2026Updated 2 weeks ago
- ☆27Jun 27, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆18Jan 29, 2025Updated last year
- Evaluate variant calls and its combination with k-mer multiplicity☆73Dec 2, 2022Updated 3 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Downstream Analysis☆21Jun 28, 2026Updated 2 months ago
- ☆16Apr 3, 2023Updated 3 years ago
- Identify and find telomeres, or telomeric repeats in a genome.☆177Nov 24, 2025Updated 10 months ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated last year
- Convert Tandem Repeat Finder dat file output into gff3 format☆32Sep 7, 2026Updated 2 weeks ago
- Phasing of dikaryotic fungal genome assemblies☆13Mar 1, 2023Updated 3 years ago
- De novo assembly from Oxford Nanopore reads.☆89Jun 29, 2026Updated 2 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- RepeatIdentifier☆75Mar 19, 2025Updated last year
- A plant organellar Graphical Fragment Assembly toolkit☆17Updated this week
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆184Jun 23, 2026Updated 3 months ago
- A tool for performing collinearity-incorporating homology inference☆34Jul 17, 2026Updated 2 months ago
- Close assembly gaps using long-reads at high accuracy.☆52Feb 20, 2024Updated 2 years ago
- ☆33Apr 7, 2025Updated last year
- The complete sequence of a Chinese individual☆14Oct 8, 2024Updated last year