A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
☆51May 2, 2026Updated this week
Alternatives and similar repositories for teloclip
Users that are interested in teloclip are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16Jul 25, 2021Updated 4 years ago
- use long sequenced reads to close gaps in assemblies☆40Sep 4, 2018Updated 7 years ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Apr 22, 2024Updated 2 years ago
- ☆42May 19, 2025Updated 11 months ago
- Genome haplotype assembly and assessment method☆12Nov 24, 2023Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.☆10Apr 27, 2026Updated last week
- Centromics: visualing centromeres with multiple omics data☆25Mar 4, 2025Updated last year
- This is a method to find telomeres and centromeres in plants.☆43Jun 17, 2023Updated 2 years ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆14Mar 11, 2019Updated 7 years ago
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Nov 23, 2025Updated 5 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆37Jun 6, 2022Updated 3 years ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69May 22, 2021Updated 4 years ago
- a fork of the gap-closing pipeline PBJelly☆15Jan 7, 2019Updated 7 years ago
- ☆26Apr 22, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A program for assessing the T2T genome continuity and completeness☆95Feb 28, 2026Updated 2 months ago
- ☆18Jan 29, 2025Updated last year
- A genome-scale, fast, and precise segmental duplications mapping tool☆35Sep 11, 2024Updated last year
- A gap-closing software tool that uses long reads to enhance genome assembly.☆237Sep 6, 2024Updated last year
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆13Nov 6, 2025Updated 5 months ago
- ☆16Apr 3, 2023Updated 3 years ago
- Evaluate variant calls and its combination with k-mer multiplicity☆68Dec 2, 2022Updated 3 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Downstream Analysis☆20Apr 10, 2026Updated 3 weeks ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated 11 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Convert Tandem Repeat Finder dat file output into gff3 format☆31Nov 9, 2025Updated 5 months ago
- De novo assembly from Oxford Nanopore reads.☆89Feb 16, 2026Updated 2 months ago
- Close assembly gaps using long-reads at high accuracy.☆51Feb 20, 2024Updated 2 years ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 7 months ago
- The complete sequence of a Chinese individual☆12Oct 8, 2024Updated last year
- Telomere compliment tools☆26Nov 17, 2025Updated 5 months ago
- ☆31Apr 7, 2025Updated last year
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 11 months ago
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on 3C-based data (Pore-C, CiFi, Hi-C，Omni-C).☆93Jan 25, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆20Dec 5, 2023Updated 2 years ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆390Apr 22, 2026Updated last week
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆36Apr 23, 2025Updated last year
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Mar 5, 2023Updated 3 years ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆170Oct 29, 2025Updated 6 months ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆108Jan 17, 2026Updated 3 months ago
- The tools are used for displaying hic signal of genome☆25Jan 4, 2021Updated 5 years ago