An ultra-fast and efficient genomic tool for coverage calculation
☆174Jun 9, 2026Updated 4 months ago
Alternatives and similar repositories for PanDepth
Users that are interested in PanDepth are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An ultra-fast and efficient tool for high frequency kmer sequencing reads extraction☆19Mar 6, 2024Updated 2 years ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆28May 18, 2024Updated 2 years ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆46Updated this week
- An ultra-fast gzip file tools☆29Jun 23, 2026Updated 4 months ago
- Any Way to Show Multi genomic Synteny☆232Oct 14, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Repeat-aware polishing genomes assembled using HiFi long reads☆106Apr 7, 2026Updated 6 months ago
- ☆205Oct 5, 2026Updated 3 weeks ago
- High-precision TE Annotator☆168Dec 4, 2025Updated 10 months ago
- ☆43Jun 8, 2023Updated 3 years ago
- Constructing a pangenome gene graph☆213Aug 11, 2025Updated last year
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆288Aug 10, 2026Updated 2 months ago
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated last year
- A new simple and efficient software to PCA and Cluster For popolation VCF File☆84Aug 1, 2026Updated 3 months ago
- A GUI tools for Gap closed based on assembly graph☆14Nov 4, 2025Updated 11 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- This is the standalone version of the EviAnn pipeline☆187Oct 7, 2026Updated 3 weeks ago
- Jasmine: SV Merging Across Samples☆264Dec 20, 2024Updated last year
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆61Jun 20, 2026Updated 4 months ago
- Application of pan-genome for population☆123Oct 26, 2025Updated last year
- Make colorful identity heatmaps of genomic sequence☆141May 24, 2024Updated 2 years ago
- A genome completeness evaluation tool based on miniprot☆270Oct 7, 2026Updated 3 weeks ago
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on 3C-based data (Pore-C, CiFi, Hi-C, Omni-C).☆115Jul 23, 2026Updated 3 months ago
- accurate LiftOver tool for new genome assemblies☆155Aug 8, 2024Updated 2 years ago
- Whole Genome Alignment Tools☆225Nov 6, 2025Updated 11 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A filter algorithm with program to filter an alignment or mapping file☆13May 15, 2025Updated last year
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆192Jun 23, 2026Updated 4 months ago
- Pangenome-based genome inference☆184Oct 26, 2026Updated last week
- A KMER-based genome-wIde Assocation testing approach on polyploids☆72Jul 29, 2026Updated 3 months ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆53Sep 22, 2025Updated last year
- Plant genome assembly and annotation pipeline using snakemake☆55May 14, 2025Updated last year
- Centromics: visualing centromeres with multiple omics data☆28Mar 4, 2025Updated last year
- Synteny and Rearrangement Identifier☆496Jul 1, 2026Updated 4 months ago
- ☆34Apr 7, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Using Deep Learning to predict gene annotations☆315Updated this week
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆214Sep 28, 2026Updated last month
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆30Jul 16, 2026Updated 3 months ago
- The tools are used for displaying hic signal of genome☆25Jan 4, 2021Updated 5 years ago
- ☆42May 19, 2025Updated last year
- A haplotype-resolved and telomere-to-telomere genome assembly pipeline (PHap) tailored for autopolyploids, relying solely on common seque…☆31Jul 29, 2025Updated last year