HuiyangYu / PanDepthLinks
An ultra-fast and efficient genomic tool for coverage calculation
☆157Updated 4 months ago
Alternatives and similar repositories for PanDepth
Users that are interested in PanDepth are comparing it to the libraries listed below
Sorting:
- accurate LiftOver tool for new genome assemblies☆133Updated last year
- Constructing a pangenome gene graph☆193Updated 2 months ago
- Pangenome-based genome inference☆135Updated last week
- Generate an interactive dot plot from mummer or minimap alignments☆208Updated last year
- Ultra-fast preprocessing and quality control for long-read sequencing data☆170Updated last month
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆118Updated 4 years ago
- Any Way to Show Multi genomic Synteny☆201Updated last month
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆141Updated 7 months ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆94Updated 8 months ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆177Updated 9 months ago
- Jasmine: SV Merging Across Samples☆219Updated 7 months ago
- Dfam Transposable Element Tools Docker container.☆99Updated last month
- pbsv - PacBio structural variant (SV) calling and analysis tools☆155Updated 5 months ago
- A pipeline used to identify different modes of duplicated gene pairs☆105Updated 2 weeks ago
- ☆81Updated last year
- Tandem repeat genotyping and visualization from PacBio HiFi data☆122Updated last week
- Structural Variant Identification Method using Long Reads☆173Updated 4 years ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆172Updated last year
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆189Updated last month
- Find, circularise and annotate mitogenome from PacBio assemblies☆185Updated 3 months ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆108Updated last year
- source code for EVM☆116Updated 8 months ago
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…☆97Updated 2 months ago
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆175Updated 3 months ago
- Version 5 of the CAFE phylogenetics software☆136Updated 5 months ago
- Genomic related tools☆71Updated 3 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆188Updated last year
- Collection of tools for the analysis of CpG data☆87Updated last month
- This is an archive version of old RepBase library (v20170127) for RepeatMasker.☆37Updated 4 years ago
- Whole Genome Alignment Tools☆204Updated 2 months ago