An ultra-fast and efficient genomic tool for coverage calculation
☆171Feb 9, 2026Updated 2 months ago
Alternatives and similar repositories for PanDepth
Users that are interested in PanDepth are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An ultra-fast and efficient tool for high frequency kmer sequencing reads extraction☆19Mar 6, 2024Updated 2 years ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆26May 18, 2024Updated last year
- An ultra-fast gzip file tools☆27Apr 25, 2024Updated last year
- Repeat-aware polishing genomes assembled using HiFi long reads☆99Updated this week
- ☆186Feb 10, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆46Mar 13, 2026Updated last month
- ☆41Jun 8, 2023Updated 2 years ago
- ☆31Apr 7, 2025Updated last year
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆167Oct 29, 2025Updated 5 months ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆110Mar 13, 2026Updated last month
- Any Way to Show Multi genomic Synteny☆223Jul 4, 2025Updated 9 months ago
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆260Jan 5, 2026Updated 3 months ago
- Make colorful identity heatmaps of genomic sequence☆128May 24, 2024Updated last year
- ☆16Apr 3, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- High-precision TE Annotator☆152Dec 4, 2025Updated 4 months ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆233Sep 6, 2024Updated last year
- A new simple and efficient software to PCA and Cluster For popolation VCF File☆82Jun 25, 2025Updated 9 months ago
- Constructing a pangenome gene graph☆205Aug 11, 2025Updated 8 months ago
- The tools are used for displaying hic signal of genome☆25Jan 4, 2021Updated 5 years ago
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on 3C-based data (Pore-C, CiFi, Hi-C,Omni-C).☆90Jan 25, 2026Updated 2 months ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆49Sep 22, 2025Updated 6 months ago
- Yet another k-mer analyzer☆166Dec 30, 2025Updated 3 months ago
- ☆42May 19, 2025Updated 10 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- A tool for performing collinearity-incorporating homology inference☆33Oct 7, 2023Updated 2 years ago
- A genome completeness evaluation tool based on miniprot☆238Sep 18, 2025Updated 6 months ago
- Whole Genome Alignment Tools☆223Nov 6, 2025Updated 5 months ago
- Application of pan-genome for population☆117Oct 26, 2025Updated 5 months ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆54Aug 27, 2025Updated 7 months ago
- This is the standalone version of the EviAnn pipeline☆143Apr 2, 2026Updated last week
- Plant genome assembly and annotation pipeline using snakemake☆53May 14, 2025Updated 10 months ago
- Jasmine: SV Merging Across Samples☆246Dec 20, 2024Updated last year
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆108Nov 17, 2025Updated 4 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆57Jul 19, 2025Updated 8 months ago
- Neural network classification of TE☆98Apr 3, 2026Updated last week
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- Using Deep Learning to predict gene annotations☆281Mar 6, 2026Updated last month
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated 10 months ago
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 3 years ago
- Synteny and Rearrangement Identifier☆460Mar 17, 2026Updated 3 weeks ago