An ultra-fast and efficient genomic tool for coverage calculation
☆175Jun 9, 2026Updated 4 months ago
Alternatives and similar repositories for PanDepth
Users that are interested in PanDepth are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An ultra-fast and efficient tool for high frequency kmer sequencing reads extraction☆19Mar 6, 2024Updated 2 years ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆28May 18, 2024Updated 2 years ago
- An ultra-fast gzip file tools☆29Jun 23, 2026Updated 3 months ago
- Repeat-aware polishing genomes assembled using HiFi long reads☆105Apr 7, 2026Updated 6 months ago
- ☆201Oct 5, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆46Sep 19, 2026Updated 3 weeks ago
- ☆43Jun 8, 2023Updated 3 years ago
- ☆33Apr 7, 2025Updated last year
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆287Aug 10, 2026Updated 2 months ago
- This is the standalone version of the EviAnn pipeline☆187Updated this week
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆188Jun 23, 2026Updated 3 months ago
- Any Way to Show Multi genomic Synteny☆232Oct 1, 2026Updated last week
- A new simple and efficient software to PCA and Cluster For popolation VCF File☆84Aug 1, 2026Updated 2 months ago
- ☆16Apr 3, 2023Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- High-precision TE Annotator☆165Dec 4, 2025Updated 10 months ago
- Make colorful identity heatmaps of genomic sequence☆140May 24, 2024Updated 2 years ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆250Sep 6, 2024Updated 2 years ago
- ☆50Jul 23, 2025Updated last year
- Constructing a pangenome gene graph☆212Aug 11, 2025Updated last year
- The tools are used for displaying hic signal of genome☆25Jan 4, 2021Updated 5 years ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆60Jun 20, 2026Updated 3 months ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆212Sep 28, 2026Updated 2 weeks ago
- Yet another k-mer analyzer☆178Dec 30, 2025Updated 9 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆52Sep 22, 2025Updated last year
- ☆42May 19, 2025Updated last year
- A genome completeness evaluation tool based on miniprot☆269Updated this week
- Whole Genome Alignment Tools☆223Nov 6, 2025Updated 11 months ago
- Plant genome assembly and annotation pipeline using snakemake☆55May 14, 2025Updated last year
- A tool for performing collinearity-incorporating homology inference☆34Jul 17, 2026Updated 2 months ago
- Application of pan-genome for population☆122Oct 26, 2025Updated 11 months ago
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated last year
- Jasmine: SV Merging Across Samples☆262Dec 20, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Using Deep Learning to predict gene annotations☆310Oct 6, 2026Updated last week
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆275Updated this week
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 3 years ago
- Neural network classification of TE☆104Apr 3, 2026Updated 6 months ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆61Jul 19, 2025Updated last year
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆114Nov 17, 2025Updated 10 months ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated last year