HuiyangYu / PanDepthLinks
An ultra-fast and efficient genomic tool for coverage calculation
☆157Updated 5 months ago
Alternatives and similar repositories for PanDepth
Users that are interested in PanDepth are comparing it to the libraries listed below
Sorting:
- accurate LiftOver tool for new genome assemblies☆134Updated last year
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆144Updated 7 months ago
- Pangenome-based genome inference☆139Updated last month
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆153Updated last month
- Any Way to Show Multi genomic Synteny☆201Updated last month
- Dfam Transposable Element Tools Docker container.☆100Updated last week
- Generate an interactive dot plot from mummer or minimap alignments☆209Updated last year
- A pipeline used to identify different modes of duplicated gene pairs☆106Updated last month
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆95Updated last week
- Tandem repeat genotyping and visualization from PacBio HiFi data☆123Updated last month
- Constructing a pangenome gene graph☆195Updated 2 weeks ago
- Whole Genome Alignment Tools☆205Updated 2 months ago
- ☆82Updated last year
- Collection of tools for the analysis of CpG data☆91Updated last month
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆178Updated 10 months ago
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆191Updated 2 months ago
- Tools for plotting methylation data in various ways☆160Updated 2 weeks ago
- Genomic related tools☆71Updated 3 years ago
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…☆97Updated 3 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆188Updated last year
- This is an archive version of old RepBase library (v20170127) for RepeatMasker.☆37Updated 4 years ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆172Updated last year
- source code for EVM☆116Updated 9 months ago
- Jasmine: SV Merging Across Samples☆224Updated 8 months ago
- Structural Variant Identification Method using Long Reads☆173Updated 4 years ago
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆118Updated 4 years ago
- ☆102Updated 3 weeks ago
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆228Updated 3 weeks ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆158Updated 6 months ago
- TransposonUltimate - a holistic set of tools for transposon identification☆84Updated 3 years ago