HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data
☆278Aug 10, 2026Updated this week
Alternatives and similar repositories for HapHiC
Users that are interested in HapHiC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on 3C-based data (Pore-C, CiFi, Hi-C, Omni-C).☆107Jul 23, 2026Updated 3 weeks ago
- Yet another Hi-C scaffolding tool☆181Nov 4, 2024Updated last year
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆180Jun 23, 2026Updated last month
- A novel genome assembly pipeline based on deep learning☆71Dec 2, 2024Updated last year
- Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning☆29Aug 14, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- use long sequenced reads to close gaps in assemblies☆39Sep 4, 2018Updated 7 years ago
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆77Jun 4, 2026Updated 2 months ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆243Sep 6, 2024Updated last year
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆180Oct 20, 2024Updated last year
- Repeat-aware polishing genomes assembled using HiFi long reads☆105Apr 7, 2026Updated 4 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69May 22, 2021Updated 5 years ago
- This is the standalone version of the EviAnn pipeline☆182Updated this week
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆170Nov 4, 2025Updated 9 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Dynamic Elongation of a Genome Assembly Path☆28Jul 27, 2026Updated 2 weeks ago
- A genome completeness evaluation tool based on miniprot☆260Jul 29, 2026Updated 2 weeks ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆800May 31, 2026Updated 2 months ago
- Identify and find telomeres, or telomeric repeats in a genome.☆173Nov 24, 2025Updated 8 months ago
- Telomere compliment tools☆26Nov 17, 2025Updated 8 months ago
- A KMER-based genome-wIde Assocation testing approach on polyploids☆67Jul 29, 2026Updated 2 weeks ago
- ☆28May 12, 2026Updated 3 months ago
- ☆33Apr 7, 2025Updated last year
- A program for assessing the T2T genome continuity and completeness☆95Feb 28, 2026Updated 5 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆409Aug 4, 2026Updated last week
- Using Deep Learning to predict gene annotations☆303Jul 22, 2026Updated 3 weeks ago
- Synteny and Rearrangement Identifier☆484Jul 1, 2026Updated last month
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆298May 28, 2026Updated 2 months ago
- ☆35Jun 24, 2026Updated last month
- A organelle de novo genome assembly toolkit☆82Feb 22, 2025Updated last year
- ☆156Updated this week
- haplotypic duplication identification tool☆295Oct 30, 2025Updated 9 months ago
- A chromosome-level polyploid phasing scaffolding tool☆18Aug 6, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- High-precision TE Annotator☆164Dec 4, 2025Updated 8 months ago
- Neural network classification of TE☆101Apr 3, 2026Updated 4 months ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- An Example of Subgenome Phasing for Complex Allopolyploidy☆17Nov 6, 2025Updated 9 months ago
- ☆45Dec 11, 2025Updated 8 months ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆207Apr 27, 2026Updated 3 months ago
- Extensive de-novo TE Annotator☆466Jul 16, 2026Updated 3 weeks ago