sc-zhang / CATGLinks
CATG (Collinearity-based Assembly correcTor GUI) is a tool that can correct genome assembly with collinearity and generate tour files for assembly.
☆17Updated this week
Alternatives and similar repositories for CATG
Users that are interested in CATG are comparing it to the libraries listed below
Sorting:
- ☆29Updated 3 years ago
- Some components that speed up and reduce resource cost for original ALLHiC☆14Updated 7 months ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆20Updated 3 weeks ago
- ☆16Updated 2 years ago
- Simple tools for working with Hi-C data☆18Updated 7 years ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆15Updated 4 months ago
- The tools are used for displaying hic signal of genome☆24Updated 5 years ago
- ☆26Updated 2 months ago
- ☆21Updated last year
- ☆31Updated 9 months ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆34Updated 2 months ago
- Dynamic Elongation of a Genome Assembly Path☆25Updated last month
- A pipeline for genomic variant detection with genome assemblies at population scale☆36Updated 7 months ago
- Inferring natural selection by comparative population genomic analysis across species☆25Updated 2 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Updated 2 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Updated 4 years ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆30Updated 2 months ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Updated last year
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Updated 5 years ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- A genome assembly assessment pipeline.☆38Updated 2 years ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆13Updated 6 years ago
- ☆16Updated last year
- ☆27Updated 2 years ago
- Identification of conserved non-coding sequences in plants☆31Updated 3 months ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆26Updated last year
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆12Updated 2 months ago
- A Hi-C scaffolding method☆22Updated 4 years ago
- Domain based annotation of transposable elements☆21Updated 3 months ago