CATG (Collinearity-based Assembly correcTor GUI) is a tool that can correct genome assembly with collinearity and generate tour files for assembly.
☆18Jan 24, 2026Updated 8 months ago
Alternatives and similar repositories for CATG
Users that are interested in CATG are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Some components that speed up and reduce resource cost for original ALLHiC☆15Jun 21, 2025Updated last year
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆17Sep 17, 2025Updated last year
- several scripts for bioinformatics☆25Nov 27, 2025Updated 9 months ago
- AlleleFinder is a tool for identifying allele genes from polyploid genome.☆40May 29, 2026Updated 3 months ago
- A plot package for bioinformatics☆29Jan 24, 2026Updated 8 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆36Jun 24, 2026Updated 3 months ago
- ☆29Jul 16, 2022Updated 4 years ago
- Simple tools for working with Hi-C data☆20Dec 19, 2018Updated 7 years ago
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆76Jun 4, 2026Updated 3 months ago
- ☆16Apr 3, 2023Updated 3 years ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆70May 22, 2021Updated 5 years ago
- Homologizer: phasing gene copies into polyploid subgenomes☆13Feb 3, 2026Updated 7 months ago
- An ultra-fast gzip file tools☆29Jun 23, 2026Updated 3 months ago
- A genome assembly assessment pipeline.☆39Jun 5, 2026Updated 3 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A KMER-based genome-wIde Assocation testing approach on polyploids☆70Jul 29, 2026Updated last month
- a gap-filling tools of genome in complex region.☆27Dec 30, 2025Updated 8 months ago
- Haplotype aware de novo assembly of diploid genome from long reads☆54Mar 16, 2022Updated 4 years ago
- ☆28May 12, 2026Updated 4 months ago
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on 3C-based data (Pore-C, CiFi, Hi-C, Omni-C).☆111Jul 23, 2026Updated 2 months ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- A tool for visualization of pairwise alignments of multiple sequences☆19Aug 12, 2025Updated last year
- Dynamic Elongation of a Genome Assembly Path☆28Jul 27, 2026Updated last month
- ☆33Apr 7, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Fast and frugal disk based k-mer counter☆14Apr 1, 2021Updated 5 years ago
- A Toolkit for analyzing next-generation DNA Re-Sequencing data☆15Feb 15, 2022Updated 4 years ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆20Dec 5, 2023Updated 2 years ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated last year
- ☆45Dec 11, 2025Updated 9 months ago
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆285Aug 10, 2026Updated last month
- ☆10Jun 13, 2020Updated 6 years ago
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 6 years ago