sc-zhang / CATG
CATG (Collinearity-based Assembly correcTor GUI) is a tool that can correct genome assembly with collinearity and generate tour files for assembly.
☆15Updated last month
Alternatives and similar repositories for CATG:
Users that are interested in CATG are comparing it to the libraries listed below
- Some components that speed up and reduce resource cost for original ALLHiC☆12Updated 11 months ago
- ☆27Updated 2 years ago
- ☆15Updated last year
- The tools are used for displaying hic signal of genome☆23Updated 4 years ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆15Updated last week
- Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C or Hi-C.☆22Updated this week
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 5 years ago
- ☆15Updated last month
- Simple tools for working with Hi-C data☆16Updated 6 years ago
- T2Tools is a toolset contains several tools for plant T2T assembly, and it is under development.☆11Updated 4 months ago
- ☆20Updated last year
- This pipeline is used to distinguish allotetraploid subgenomes.☆10Updated 9 months ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- ☆25Updated 3 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆21Updated 8 months ago
- ☆21Updated 11 months ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆24Updated last month
- ☆20Updated 5 months ago
- Construct and Analyze the North American Vitis pangenome☆21Updated last year
- ☆16Updated 3 years ago
- SINE annotation tool for plant genomes☆17Updated last year
- Dynamic Elongation of a Genome Assembly Path☆20Updated 8 months ago
- ☆22Updated 2 years ago
- Centromics: visualing centromeres with multiple omics data☆22Updated 2 months ago
- Yet another Hi-C scaffolding tool☆18Updated 3 months ago
- Draw a dot plot from a paf alignment☆25Updated last month
- Reduce genome assembly redundancy using shared mapped k-mer method.☆13Updated 9 months ago
- ☆17Updated last year
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆13Updated 4 years ago