Alternatives and similar repositories for CATG:

Users that are interested in CATG are comparing it to the libraries listed below

• sc-zhang / ALLHiC_extensions
  Some components that speed up and reduce resource cost for original ALLHiC
  ☆13Updated last month
• lardo / khaper
  ☆27Updated 2 years ago
• amsession / Kmer-based-Subgenome-Mapping
  ☆20Updated 9 months ago
• Kirovez / pyTanFinder
  Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results
  ☆12Updated 6 years ago
• Atvar2 / plotHicGenome
  The tools are used for displaying hic signal of genome
  ☆23Updated 4 years ago
• phasegenomics / matlock
  Simple tools for working with Hi-C data
  ☆18Updated 6 years ago
• yilinZhang-bio / Watermelon-pangenome
  ☆22Updated last year
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆23Updated 3 years ago
• wangziwei08 / LTR-insertion-time-estimation
  ☆15Updated 2 years ago
• noecochetel / North_American_Vitis_Pangenome
  Construct and Analyze the North American Vitis pangenome
  ☆23Updated last year
• LQHHHHH / paml-yn00-run-pipeline
  A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method
  ☆9Updated 2 months ago
• tangerzhang / calc_switchErr
  ☆27Updated last month
• legumeinfo / pandagma
  Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.
  ☆17Updated last month
• YaoZhou89 / WGSc
  ☆15Updated 3 years ago
• Jianwei-Zhang / DEGAP
  Dynamic Elongation of a Genome Assembly Path
  ☆21Updated last year
• moold / paf2dotplot
  Draw a dot plot from a paf alignment
  ☆27Updated last month
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆27Updated 3 years ago
• jkimlab / DESCHRAMBLER
  ☆23Updated last year
• yuanw-18 / Allo4D
  This pipeline is used to distinguish allotetraploid subgenomes.
  ☆10Updated last year
• HuiyangYu / TGSFilter
  TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming
  ☆21Updated 11 months ago
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆19Updated 6 months ago
• Argonum-Clever2 / mike
  ☆29Updated last month
• almeidasilvaf / doubletrouble
  An R package to identify and classify duplicated genes from whole-genome protein sequence data
  ☆25Updated last month
• unavailable-2374 / Pan_TE
  PanTE: A Comprehensive Framework for Transposable Element Discovery in Graph-based Pangenomes
  ☆13Updated this week
• linguoliang / puzzle-hi-c
  ☆15Updated 4 months ago
• HuiyangYu / HFKReads
  An ultra-fast and efficient tool for high frequency kmer sequencing reads extraction
  ☆19Updated last year
• Chenglin20170390 / Haplotype-diversity
  This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…
  ☆29Updated 3 months ago
• SunPengChuan / wgdi-example
  ☆16Updated 4 months ago
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆37Updated last year
• tbenavi1 / KMC
  Fast and frugal disk based k-mer counter
  ☆14Updated 4 years ago