Nextomics / NextPolish2Links
Repeat-aware polishing genomes assembled using HiFi long reads
☆88Updated 7 months ago
Alternatives and similar repositories for NextPolish2
Users that are interested in NextPolish2 are comparing it to the libraries listed below
Sorting:
- Application of pan-genome for population☆106Updated 8 months ago
- MCHelper: An automatic tool to curate transposable element libraries☆36Updated 2 months ago
- A organelle de novo genome assembly toolkit☆60Updated 4 months ago
- Detecting multi-genome synteny using minimizer graph mapping☆78Updated last month
- A program for assessing the T2T genome continuity☆79Updated last week
- High-precision TE Annotator☆119Updated 2 weeks ago
- Annotation helper tool for the manual curation of transposable element consensus sequences☆48Updated 3 months ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆90Updated 11 months ago
- tomato graph pangenome☆83Updated 2 years ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆100Updated 8 months ago
- Structural Variant Identification Method using Genome Assemblies☆120Updated 2 years ago
- Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file☆51Updated 8 months ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆97Updated 4 months ago
- Mapping pipeline for data generated using Arima-HiC☆78Updated last year
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆110Updated last week
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆48Updated last year
- PacBio BAM toolkit☆43Updated 4 months ago
- A Nextflow pipeline for evaluating assembly quality☆34Updated this week
- Evaluating genome assemblies☆97Updated last week
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 7 months ago
- source code for EVM☆112Updated 6 months ago
- SRF: Satellite Repeat Finder☆96Updated last year
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 5 months ago
- ☆44Updated 8 years ago
- Evaluate variant calls and its combination with k-mer multiplicity☆67Updated 2 years ago
- This is the standalone version of the EviAnn pipeline☆97Updated last week
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆74Updated 2 months ago
- Portable solution to generate genome alignment chains using lastz☆57Updated 3 weeks ago
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆74Updated last week