OmarOakheart / nPhaseLinks
Ploidy agnostic phasing pipeline and algorithm
☆45Updated last year
Alternatives and similar repositories for nPhase
Users that are interested in nPhase are comparing it to the libraries listed below
Sorting:
- ☆35Updated last year
- ☆35Updated 2 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆38Updated 7 months ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆37Updated last month
- Compute N50/NG50 and auN/auNG☆32Updated last year
- A genome assembly assessment pipeline.☆37Updated last year
- Draw a dot plot from a paf alignment☆29Updated 2 months ago
- ☆29Updated 5 months ago
- ☆28Updated last year
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆28Updated 8 months ago
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆26Updated 4 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated last month
- ☆42Updated last year
- ☆29Updated 2 months ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆40Updated 6 months ago
- Toolkit for evolutionary analyses of linkage groups☆31Updated 10 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- ☆35Updated 2 weeks ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated last year
- Statistics and analysis for variation graphs☆40Updated 5 months ago
- ☆16Updated 2 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- ☆30Updated 5 years ago
- SV calling for diploid assemblies☆27Updated last year
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- SRY: an effective method for sorting long-read of sex-limited (Y or W) chromosome.☆18Updated last year
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- ☆32Updated 4 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆35Updated this week