OmarOakheart / nPhaseLinks
Ploidy agnostic phasing pipeline and algorithm
☆48Updated 2 years ago
Alternatives and similar repositories for nPhase
Users that are interested in nPhase are comparing it to the libraries listed below
Sorting:
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆42Updated last year
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- SV calling for diploid assemblies☆30Updated last year
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆50Updated last month
- convert PAF format to CHAIN format☆34Updated 7 months ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- ☆31Updated 6 years ago
- ☆44Updated last year
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆24Updated 5 years ago
- ☆38Updated 2 months ago
- ☆32Updated last year
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆38Updated 2 weeks ago
- Visualising discordant reads☆15Updated 10 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- ☆39Updated 2 years ago
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago
- A tool for quick and accurate calculation of syntenic diversity.☆42Updated 3 months ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Updated 2 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 8 months ago
- ☆29Updated 2 years ago
- A genome assembly assessment pipeline.☆37Updated 2 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 6 years ago
- FastK based version of Merqury☆30Updated 3 months ago
- Fast and frugal disk based k-mer counter☆14Updated 4 years ago
- WinPCA. A package for windowed principal component analysis.☆44Updated last month
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 7 years ago