☆29Jul 16, 2022Updated 3 years ago
Alternatives and similar repositories for khaper
Users that are interested in khaper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆32Apr 7, 2025Updated last year
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆17Sep 17, 2025Updated 9 months ago
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆74Jun 4, 2026Updated 3 weeks ago
- Some components that speed up and reduce resource cost for original ALLHiC☆15Jun 21, 2025Updated last year
- A genome assembly assessment pipeline.☆38Jun 5, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69May 22, 2021Updated 5 years ago
- A pipeline used to identify different modes of duplicated gene pairs☆120Jul 22, 2025Updated 11 months ago
- CATG (Collinearity-based Assembly correcTor GUI) is a tool that can correct genome assembly with collinearity and generate tour files for…☆18Jan 24, 2026Updated 5 months ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- The tools are used for displaying hic signal of genome☆26Jan 4, 2021Updated 5 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Downstream Analysis☆20Updated this week
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on 3C-based data (Pore-C, CiFi, Hi-C, Omni-C).☆100May 7, 2026Updated last month
- Repeat-aware polishing genomes assembled using HiFi long reads☆105Apr 7, 2026Updated 2 months ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆20Dec 5, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆15Apr 16, 2026Updated 2 months ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- A novel genome assembly pipeline based on deep learning☆71Dec 2, 2024Updated last year
- Convert Tandem Repeat Finder dat file output into gff3 format☆32Nov 9, 2025Updated 7 months ago
- this project is content about my bioinformation analysis code .it may have R，Shell，Python.☆20Nov 9, 2023Updated 2 years ago
- ☆26Mar 23, 2024Updated 2 years ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆179Oct 20, 2024Updated last year
- A gap-closing software tool that uses long reads to enhance genome assembly.☆241Sep 6, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Visualing species tree from ASTRAL with gene tree discordance☆33May 13, 2025Updated last year
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated last year
- ☆87Jul 12, 2024Updated last year
- Simple tools for working with Hi-C data☆20Dec 19, 2018Updated 7 years ago
- Draw a dot plot from a paf alignment☆44May 9, 2026Updated last month
- ☆12Nov 23, 2020Updated 5 years ago
- ☆35Jun 24, 2026Updated last week
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆39Mar 5, 2023Updated 3 years ago
- This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.☆31Apr 2, 2026Updated 3 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Generate an interactive dot plot from mummer or minimap alignments☆219Jan 17, 2024Updated 2 years ago
- ☆10Jun 13, 2020Updated 6 years ago
- ☆32Jan 3, 2025Updated last year
- Evaluation and polishing workflows for T2T genome assemblies☆156Jun 16, 2026Updated 2 weeks ago
- Robust Eukaryotic Annotation Toolkit☆17Feb 28, 2025Updated last year
- haplotypic duplication identification tool☆289Oct 30, 2025Updated 8 months ago
- A complete telomere-to-telomere assembly of sheep: T2T-sheep1.0☆21Nov 2, 2024Updated last year