Alternatives and similar repositories for khaper

Users that are interested in khaper are comparing it to the libraries listed below

• amsession / Kmer-based-Subgenome-Mapping
  ☆21Updated last year
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆30Updated 3 years ago
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆37Updated last year
• tangerzhang / calc_switchErr
  ☆28Updated 6 months ago
• zhangrengang / SOI
  Robust identification of orthologous Synteny with the Orthology Index
  ☆33Updated this week
• baozg / phased-assembly-check
  ☆31Updated 9 months ago
• Jianwei-Zhang / DEGAP
  Dynamic Elongation of a Genome Assembly Path
  ☆22Updated last year
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆22Updated last year
• Argonum-Clever2 / mike
  ☆32Updated 7 months ago
• yiliao1022 / SVGAP
  A pipeline for genomic variant detection with genome assemblies at population scale
  ☆29Updated 4 months ago
• Zhenlisme / heliano
  HELIANO is a software for detection and classification of Helitron-like elements.
  ☆31Updated 4 months ago
• NBISweden / TransposonPSI
  TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…
  ☆14Updated 5 years ago
• Chenglin20170390 / Haplotype-diversity
  This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…
  ☆32Updated this week
• jkimlab / DESCHRAMBLER
  ☆24Updated last year
• Adamtaranto / TRF2GFF
  Convert Tandem Repeat Finder dat file output into gff3 format
  ☆28Updated 10 months ago
• Kirovez / pyTanFinder
  Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results
  ☆12Updated 6 years ago
• c-zhou / polyGembler
  ☆16Updated 3 years ago
• chenym1 / genetribe
  A tool for performing collinearity-incorporating homology inference
  ☆33Updated 2 years ago
• Immortal2333 / Telomeres_and_Centromeres
  This is a method to find telomeres and centromeres in plants.
  ☆42Updated 2 years ago
• JiaoLab2021 / SynDiv
  A tool for quick and accurate calculation of syntenic diversity.
  ☆42Updated last month
• schatzlab / pseudohaploid
  Create a pseudohaploid assembly from a partially resolved diploid assembly
  ☆32Updated 5 years ago
• moold / paf2dotplot
  Draw a dot plot from a paf alignment
  ☆34Updated last month
• zhangrengang / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆24Updated 7 months ago
• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆48Updated 5 months ago
• yilinZhang-bio / Watermelon-pangenome
  ☆24Updated 2 years ago
• CMB-BNU / PloidyFrost
  reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph
  ☆17Updated 2 years ago
• almeidasilvaf / doubletrouble
  An R package to identify and classify duplicated genes from whole-genome protein sequence data
  ☆28Updated last month
• Atvar2 / plotHicGenome
  The tools are used for displaying hic signal of genome
  ☆24Updated 4 years ago
• JM-SONG / GenomeSyn
  ☆25Updated 3 years ago
• i10labtitech / GINGER
  ☆29Updated last year