Alternatives and similar repositories for khaper

Users that are interested in khaper are comparing it to the libraries listed below

• amsession / Kmer-based-Subgenome-Mapping
  ☆20Updated 9 months ago
• tangerzhang / calc_switchErr
  ☆27Updated last month
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆27Updated 3 years ago
• Jianwei-Zhang / DEGAP
  Dynamic Elongation of a Genome Assembly Path
  ☆21Updated last year
• zhangrengang / SOI
  Robust identification of orthologous Synteny with the Orthology Index
  ☆19Updated last week
• baozg / phased-assembly-check
  ☆29Updated 5 months ago
• Adamtaranto / TRF2GFF
  Convert Tandem Repeat Finder dat file output into gff3 format
  ☆27Updated 5 months ago
• fanagislab / EndHiC
  EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…
  ☆23Updated 2 years ago
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆37Updated last year
• Kirovez / pyTanFinder
  Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results
  ☆12Updated 6 years ago
• Chenglin20170390 / Haplotype-diversity
  This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…
  ☆30Updated 4 months ago
• rivasiker / autocoalhmm
  Automated pipeline for running CoalHMM
  ☆13Updated last year
• Argonum-Clever2 / mike
  ☆29Updated 2 months ago
• liushoucheng / SPART
  a Semi-automated pipeline for assembling T2T genome
  ☆17Updated 3 weeks ago
• unavailable-2374 / Pan_TE
  PanTE: A Comprehensive Framework for Transposable Element Discovery in Graph-based Pangenomes
  ☆14Updated 2 weeks ago
• chenym1 / genetribe
  A tool for performing collinearity-incorporating homology inference
  ☆32Updated last year
• symgenoevolab / SyntenyFinder
  SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…
  ☆30Updated 4 months ago
• simon19891216 / CentIER
  ☆31Updated 9 months ago
• jkimlab / DESCHRAMBLER
  ☆24Updated last year
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆19Updated 7 months ago
• ShuaiNIEgithub / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆18Updated last year
• LAILAB-CAU / update-Mo17
  ☆25Updated 2 years ago
• yhw320 / PanSyn
  ☆20Updated last year
• c-zhou / polyGembler
  ☆16Updated 2 years ago
• yilinZhang-bio / Watermelon-pangenome
  ☆22Updated last year
• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆44Updated 3 weeks ago
• zhangrengang / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆22Updated 3 months ago
• YaoZhou89 / WGSc
  ☆15Updated 3 years ago
• wonaya / ParaAT
  ☆9Updated 9 years ago
• xjtu-omics / HiCAT
  HiCAT new project
  ☆28Updated 2 weeks ago