Alternatives and similar repositories for khaper

Users that are interested in khaper are comparing it to the libraries listed below

• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆29Updated 3 years ago
• amsession / Kmer-based-Subgenome-Mapping
  ☆21Updated last year
• tangerzhang / calc_switchErr
  ☆27Updated 4 months ago
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆37Updated last year
• zhangrengang / SOI
  Robust identification of orthologous Synteny with the Orthology Index
  ☆25Updated 3 weeks ago
• baozg / phased-assembly-check
  ☆30Updated 7 months ago
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆21Updated 9 months ago
• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆44Updated 2 months ago
• moold / paf2dotplot
  Draw a dot plot from a paf alignment
  ☆33Updated 4 months ago
• Immortal2333 / Telomeres_and_Centromeres
  This is a method to find telomeres and centromeres in plants.
  ☆41Updated 2 years ago
• jkimlab / DESCHRAMBLER
  ☆24Updated last year
• chenym1 / genetribe
  A tool for performing collinearity-incorporating homology inference
  ☆32Updated last year
• wushyer / RGAAT_v2
  Add multiple thread function for genome comparison
  ☆15Updated 3 years ago
• fanagislab / EndHiC
  EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…
  ☆23Updated 2 years ago
• Jianwei-Zhang / DEGAP
  Dynamic Elongation of a Genome Assembly Path
  ☆21Updated last year
• zhangrengang / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆24Updated 5 months ago
• legumeinfo / pandagma
  Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.
  ☆17Updated last month
• i10labtitech / GINGER
  ☆28Updated last year
• Kirovez / pyTanFinder
  Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results
  ☆12Updated 6 years ago
• yhw320 / PanSyn
  ☆20Updated last year
• JiaoLab2021 / SynDiv
  A tool for quick and accurate calculation of syntenic diversity.
  ☆42Updated 6 months ago
• simon19891216 / CentIER
  ☆35Updated 2 weeks ago
• schatzlab / pseudohaploid
  Create a pseudohaploid assembly from a partially resolved diploid assembly
  ☆32Updated 5 years ago
• Adamtaranto / TRF2GFF
  Convert Tandem Repeat Finder dat file output into gff3 format
  ☆27Updated 7 months ago
• yanyew / SynGAP
  ☆37Updated 8 months ago
• Argonum-Clever2 / mike
  ☆31Updated 4 months ago
• sc-zhang / CATG
  CATG (Collinearity-based Assembly correcTor GUI) is a tool that can correct genome assembly with collinearity and generate tour files for…
  ☆17Updated 6 months ago
• c-zhou / polyGembler
  ☆16Updated 3 years ago
• Chenglin20170390 / Haplotype-diversity
  This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…
  ☆30Updated 6 months ago
• almeidasilvaf / doubletrouble
  An R package to identify and classify duplicated genes from whole-genome protein sequence data
  ☆27Updated this week