phasegenomics / juicebox_scriptsLinks
A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats
☆67Updated 4 years ago
Alternatives and similar repositories for juicebox_scripts
Users that are interested in juicebox_scripts are comparing it to the libraries listed below
Sorting:
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- Neural network classification of TE☆92Updated 2 months ago
- A program to call variants from genome alignment☆81Updated 3 months ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆49Updated last month
- ☆37Updated last month
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆34Updated 10 months ago
- A novel genome assembly pipeline based on deep learning☆64Updated 8 months ago
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆36Updated 2 months ago
- ☆44Updated 8 years ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 9 months ago
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C/CiFi or Hi-C.☆50Updated last month
- A parallel wrapper for LTR_FINDER☆54Updated 5 months ago
- ☆78Updated last month
- Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning☆29Updated last year
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆67Updated last month
- RepeatIdentifier☆69Updated 5 months ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆48Updated 3 months ago
- ☆40Updated 2 years ago
- DNA序列比对结果 可视化展示工具☆53Updated 2 years ago
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆47Updated 2 months ago
- HiCAT new project☆28Updated 3 months ago
- ☆77Updated 5 years ago
- A tool for evaluate long-read de novo assembly results☆48Updated last year
- a Semi-automated pipeline for assembling T2T genome☆20Updated 3 months ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆58Updated 2 years ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆81Updated 4 years ago
- Portable solution to generate genome alignment chains using lastz☆58Updated 3 months ago