Alternatives and similar repositories for SOI:

Users that are interested in SOI are comparing it to the libraries listed below

• ShuaiNIEgithub / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆17Updated last year
• lardo / khaper
  ☆27Updated 2 years ago
• Longhui-Ren / Ancestral_Genome_Reconstruction
  Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO
  ☆13Updated 6 years ago
• harris-2374 / THEx
  Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.
  ☆13Updated last year
• YingDings / Introgression-Detection-Methods
  ☆11Updated last year
• amsession / Kmer-based-Subgenome-Mapping
  ☆20Updated 6 months ago
• zhangrengang / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆22Updated 3 months ago
• CMB-BNU / PloidyFrost
  reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph
  ☆16Updated last year
• Kirovez / pyTanFinder
  Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results
  ☆12Updated 5 years ago
• kavonrtep / dante
  Domain based annotation of transposable elements
  ☆19Updated 2 weeks ago
• xiekunwhy / kmerDedup
  Reduce genome assembly redundancy using shared mapped k-mer method.
  ☆13Updated 9 months ago
• yhw320 / PanSyn
  ☆17Updated last year
• tangerzhang / calc_switchErr
  ☆25Updated 3 years ago
• wangziwei08 / LTR-insertion-time-estimation
  ☆15Updated last year
• cchauve / ANGeS
  Reconstruction of ancestral genome maps
  ☆16Updated 6 years ago
• slimsuite / diploidocus
  Diploid genome assembly analysis tools
  ☆14Updated 4 months ago
• symgenoevolab / SyntenyFinder
  SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…
  ☆28Updated last month
• yanyew / SynGAP
  ☆31Updated 3 months ago
• Argonum-Clever2 / mike
  ☆28Updated 9 months ago
• simon19891216 / CentIER
  ☆28Updated 5 months ago
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆37Updated last year
• jkimlab / DESCHRAMBLER
  ☆21Updated 11 months ago
• Chenglin20170390 / Haplotype-diversity
  This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…
  ☆24Updated 2 weeks ago
• JiaoLab2021 / SynDiv
  A tool for quick and accurate calculation of syntenic diversity.
  ☆34Updated 3 weeks ago
• ChenHuaLab / CEGA
  Inferring natural selection by comparative population genomic analysis across species
  ☆23Updated last year
• merlyescalona / yagcloser
  YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.
  ☆12Updated last year
• Jianwei-Zhang / DEGAP
  Dynamic Elongation of a Genome Assembly Path
  ☆20Updated 9 months ago
• shelkmike / Mabs
  Mabs, a genome assembly tool which optimizes parameters of Hifiasm and Flye
  ☆29Updated 2 months ago