Robust identification of orthologous Synteny with the Orthology Index
☆40Mar 1, 2026Updated last week
Alternatives and similar repositories for SOI
Users that are interested in SOI are comparing it to the libraries listed below
Sorting:
- Visualing species tree from ASTRAL with gene tree discordance☆27May 13, 2025Updated 9 months ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated last year
- ☆17Oct 21, 2024Updated last year
- ☆16Nov 19, 2025Updated 3 months ago
- ☆21Jan 29, 2024Updated 2 years ago
- A novel genome assembly pipeline based on deep learning☆69Dec 2, 2024Updated last year
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on 3C-based data (Pore-C, CiFi, Hi-C，Omni-C).☆90Jan 25, 2026Updated last month
- a broadly applicable tool for automated gene identification and retrieval☆40Feb 22, 2026Updated 2 weeks ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Apr 22, 2024Updated last year
- An R package for comparative transcriptomic analyses of hybrids and their progenitors☆15Sep 5, 2024Updated last year
- ☆45Oct 29, 2022Updated 3 years ago
- ☆21Dec 8, 2025Updated 3 months ago
- This is the standalone version of the EviAnn pipeline☆140Feb 5, 2026Updated last month
- Detecting Archaic Introgression from Population Genetic Data with S*☆10Jan 28, 2026Updated last month
- a gap-filling tools of genome in complex region.☆24Dec 30, 2025Updated 2 months ago
- A complete telomere-to-telomere assembly of sheep: T2T-sheep1.0☆21Nov 2, 2024Updated last year
- ☆45Dec 11, 2025Updated 2 months ago
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆70Mar 23, 2025Updated 11 months ago
- ☆16Jan 14, 2026Updated last month
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated last year
- Tool for fully-automated inference of species trees from raw genome assemblies☆44Feb 15, 2026Updated 3 weeks ago
- ☆29Jul 16, 2022Updated 3 years ago
- Python package and CLI for whole-genome duplication related analyses. **This package is deprecated in favor of** https://github.com/heche…☆86Jan 6, 2026Updated 2 months ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆81Dec 3, 2025Updated 3 months ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆42Updated this week
- ☆19Apr 24, 2022Updated 3 years ago
- FastOMA is a scalable software package to infer orthology relationship.☆90Feb 27, 2026Updated last week
- Dynamic Elongation of a Genome Assembly Path☆25Feb 25, 2026Updated last week
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Jul 26, 2023Updated 2 years ago
- ☆24Apr 22, 2025Updated 10 months ago
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆26Feb 4, 2026Updated last month
- Telomere compliment tools☆23Nov 17, 2025Updated 3 months ago
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated last year
- An Example of Subgenome Phasing for Complex Allopolyploidy☆15Nov 6, 2025Updated 4 months ago
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis☆15Aug 27, 2023Updated 2 years ago
- RepeatIdentifier☆71Mar 19, 2025Updated 11 months ago
- A tool to infer species tree and phylogenetic network from multilocus data☆32Jul 2, 2020Updated 5 years ago
- Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)☆227Jan 4, 2026Updated 2 months ago
- The codes to assemble two sorghum cultivars☆10May 11, 2024Updated last year