yuanw-18 / Allo4D
This pipeline is used to distinguish allotetraploid subgenomes.
☆10Updated 10 months ago
Alternatives and similar repositories for Allo4D:
Users that are interested in Allo4D are comparing it to the libraries listed below
- Reduce genome assembly redundancy using shared mapped k-mer method.☆13Updated 10 months ago
- Some components that speed up and reduce resource cost for original ALLHiC☆12Updated 11 months ago
- ☆27Updated 2 years ago
- ☆11Updated last year
- ☆20Updated 6 months ago
- Reconstruction of ancestral genome maps☆16Updated 6 years ago
- Inferring natural selection by comparative population genomic analysis across species☆23Updated last year
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated last month
- Robust identification of orthologous Synteny with the Orthology Index☆13Updated last week
- ☆15Updated last year
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 5 years ago
- The tools are used for displaying hic signal of genome☆23Updated 4 years ago
- An ultra-fast and efficient tool for high frequency kmer sequencing reads extraction☆19Updated 11 months ago
- Domain based annotation of transposable elements☆19Updated 3 weeks ago
- Genome alignment and synteny plots☆27Updated last year
- Toolkit for evolutionary analyses of linkage groups☆26Updated 7 months ago
- Centromics: visualing centromeres with multiple omics data☆22Updated 3 months ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆13Updated last year
- ☆12Updated last year
- ☆16Updated 2 years ago
- ☆22Updated 2 years ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆13Updated 9 months ago
- ☆25Updated 3 years ago
- Centromics: visualing centromeres with multiple omics data☆17Updated last year
- ☆28Updated 9 months ago
- SINE annotation tool for plant genomes☆17Updated last year
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆21Updated 9 months ago
- ☆16Updated 3 years ago
- ☆20Updated last year
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆25Updated 3 years ago