This pipeline is used to distinguish allotetraploid subgenomes.
☆11Apr 8, 2024Updated 2 years ago
Alternatives and similar repositories for Allo4D
Users that are interested in Allo4D are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆23Aug 8, 2024Updated 2 years ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 3 years ago
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆12Dec 7, 2022Updated 3 years ago
- An Example of Subgenome Phasing for Complex Allopolyploidy☆17Nov 6, 2025Updated 11 months ago
- a Semi-automated pipeline for assembling T2T genome☆29Oct 16, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Convert Tandem Repeat Finder dat file output into gff3 format☆32Oct 3, 2026Updated 2 weeks ago
- ☆27Jun 27, 2026Updated 3 months ago
- Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.☆12Feb 25, 2021Updated 5 years ago
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis☆15Aug 27, 2023Updated 3 years ago
- ☆34Apr 7, 2025Updated last year
- ☆29Jul 16, 2022Updated 4 years ago
- ☆16Oct 8, 2026Updated last week
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆17Sep 17, 2025Updated last year
- tool for dating gene age by micro- and macro-synteny with high speed and accuracy☆18Jan 3, 2026Updated 9 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Tool for fully-automated inference of species trees from raw genome assemblies☆50Aug 25, 2026Updated last month
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆38Apr 20, 2026Updated 5 months ago
- Toolkit for evolutionary analyses of linkage groups☆35Jul 17, 2024Updated 2 years ago
- A novel genome assembly pipeline based on deep learning☆71Dec 2, 2024Updated last year
- A organelle de novo genome assembly toolkit☆88Feb 22, 2025Updated last year
- ☆29May 12, 2026Updated 5 months ago
- A KMER-based genome-wIde Assocation testing approach on polyploids☆72Jul 29, 2026Updated 2 months ago
- Methylatino phasing using PacBio CCS reads☆14Dec 13, 2024Updated last year
- ☆45Oct 29, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A comprehensive C++ telomere annotation tool for genome assemblies and reads.☆18Oct 2, 2026Updated 2 weeks ago
- A tool for visualization of pairwise alignments of multiple sequences☆19Aug 12, 2025Updated last year
- ☆10Aug 21, 2025Updated last year
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆22Jul 26, 2023Updated 3 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆43Sep 24, 2026Updated 3 weeks ago
- PhyloSD: Phylogenomic Subgenome Detection pipeline☆11Jun 24, 2022Updated 4 years ago
- ☆42May 19, 2025Updated last year
- ☆21Oct 21, 2024Updated last year
- The repository serves as a public and official hosting of the pSONIC program (Conover et al., 2021).☆21Sep 9, 2021Updated 5 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆27Oct 9, 2026Updated last week
- A genome assembly assessment pipeline.☆39Jun 5, 2026Updated 4 months ago
- ☆28Mar 23, 2024Updated 2 years ago
- Robust identification of orthologous Synteny with the Orthology Index☆43Aug 22, 2026Updated last month
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆287Aug 10, 2026Updated 2 months ago
- ☆45Dec 11, 2025Updated 10 months ago
- ☆25Feb 26, 2026Updated 7 months ago