Alternatives and similar repositories for Allo4D

Users that are interested in Allo4D are comparing it to the libraries listed below

• xiekunwhy / kmerDedup
  Reduce genome assembly redundancy using shared mapped k-mer method.
  ☆15Updated 7 months ago
• sc-zhang / ALLHiC_extensions
  Some components that speed up and reduce resource cost for original ALLHiC
  ☆14Updated 5 months ago
• zhangrengang / SOI
  Robust identification of orthologous Synteny with the Orthology Index
  ☆35Updated last month
• sc-zhang / T2Tools
  T2Tools is a toolset contains several tools for T2T assembly, and it is under development.
  ☆15Updated 2 months ago
• lardo / khaper
  ☆28Updated 3 years ago
• amsession / Kmer-based-Subgenome-Mapping
  ☆21Updated last year
• YingDings / Introgression-Detection-Methods
  ☆12Updated 2 years ago
• wangziwei08 / LTR-insertion-time-estimation
  ☆16Updated 2 years ago
• panlab-bioinfo / Gap-Aid
  ☆14Updated this week
• Atvar2 / plotHicGenome
  The tools are used for displaying hic signal of genome
  ☆24Updated 4 years ago
• Adamtaranto / TRF2GFF
  Convert Tandem Repeat Finder dat file output into gff3 format
  ☆29Updated last month
• tangerzhang / calc_switchErr
  ☆30Updated 8 months ago
• HuiyangYu / HFKReads
  An ultra-fast and efficient tool for high frequency kmer sequencing reads extraction
  ☆19Updated last year
• HuiyangYu / TGSFilter
  TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming
  ☆25Updated last year
• kavonrtep / dante
  Domain based annotation of transposable elements
  ☆21Updated 2 months ago
• ChenHuaLab / CEGA
  Inferring natural selection by comparative population genomic analysis across species
  ☆25Updated 2 years ago
• Wenfei-Xian / TIPP
  Telomere local assembly, Improved whole genome polish, and Plastid assembly
  ☆22Updated 7 months ago
• xtmtd / Phylogenomics
  ☆16Updated last year
• legumeinfo / pandagma
  Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.
  ☆17Updated 3 months ago
• qunjie-zhang / gfanno
  Gene Family Annotation Workflow
  ☆11Updated last year
• cchauve / ANGeS
  Reconstruction of ancestral genome maps
  ☆16Updated 7 years ago
• jkimlab / DESCHRAMBLER
  ☆24Updated 3 weeks ago
• rpianezza / GenomeDelta
  Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…
  ☆17Updated last year
• shingocat / syntenyPlotByR
  plot genome alignment synteny
  ☆21Updated 5 years ago
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆31Updated 3 years ago
• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆33Updated 2 years ago
• sc-zhang / CATG
  CATG (Collinearity-based Assembly correcTor GUI) is a tool that can correct genome assembly with collinearity and generate tour files for…
  ☆17Updated 10 months ago
• linguoliang / puzzle-hi-c
  ☆16Updated 11 months ago
• phasegenomics / matlock
  Simple tools for working with Hi-C data
  ☆18Updated 6 years ago
• ChuanzhengWei / sorghum_T2T
  The codes to assemble two sorghum cultivars
  ☆10Updated last year