Yet another Hi-C scaffolding tool
☆183Nov 4, 2024Updated last year
Alternatives and similar repositories for yahs
Users that are interested in yahs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆279Aug 10, 2026Updated 3 weeks ago
- Identify and find telomeres, or telomeric repeats in a genome.☆175Nov 24, 2025Updated 9 months ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆808May 31, 2026Updated 3 months ago
- ☆15Apr 16, 2026Updated 4 months ago
- Using Deep Learning to predict gene annotations☆304Jul 22, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A organelle de novo genome assembly toolkit☆82Feb 22, 2025Updated last year
- Mapping pipeline for data generated using Arima-HiC☆84May 22, 2024Updated 2 years ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆413Aug 25, 2026Updated last week
- 3D de novo assembly (3D DNA) pipeline☆229Nov 29, 2023Updated 2 years ago
- haplotypic duplication identification tool☆294Oct 30, 2025Updated 10 months ago
- A genome completeness evaluation tool based on miniprot☆262Aug 17, 2026Updated 2 weeks ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69May 22, 2021Updated 5 years ago
- A novel genome assembly pipeline based on deep learning☆71Dec 2, 2024Updated last year
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on 3C-based data (Pore-C, CiFi, Hi-C, Omni-C).☆111Jul 23, 2026Updated last month
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆39Mar 5, 2023Updated 3 years ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆130Jun 18, 2026Updated 2 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆200May 11, 2025Updated last year
- Fast alignment and preprocessing of chromatin profiles☆226Mar 20, 2026Updated 5 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆37Jun 6, 2022Updated 4 years ago
- k-mer based assembly evaluation☆353Jul 6, 2026Updated last month
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆299May 28, 2026Updated 3 months ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆469Jun 17, 2026Updated 2 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆576Feb 14, 2024Updated 2 years ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆180Oct 20, 2024Updated last year
- A gap-closing software tool that uses long reads to enhance genome assembly.☆246Sep 6, 2024Updated last year
- The tools are used for displaying hic signal of genome☆25Jan 4, 2021Updated 5 years ago
- Repeat-aware polishing genomes assembled using HiFi long reads☆105Apr 7, 2026Updated 4 months ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆29May 7, 2026Updated 3 months ago
- This is the standalone version of the EviAnn pipeline☆183Aug 11, 2026Updated 3 weeks ago
- A Hi-C scaffolding method☆22Dec 22, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆213Nov 18, 2022Updated 3 years ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆118Jul 23, 2024Updated 2 years ago
- Evaluate variant calls and its combination with k-mer multiplicity☆73Dec 2, 2022Updated 3 years ago
- ☆35Jun 24, 2026Updated 2 months ago
- Align proteins to genomes with splicing and frameshift☆417Jan 5, 2026Updated 7 months ago
- Evaluation and polishing workflows for T2T genome assemblies☆168Jun 26, 2026Updated 2 months ago
- ☆124Aug 25, 2026Updated last week