Jianwei-Zhang / DEGAPLinks
Dynamic Elongation of a Genome Assembly Path
☆22Updated last year
Alternatives and similar repositories for DEGAP
Users that are interested in DEGAP are comparing it to the libraries listed below
Sorting:
- ☆28Updated 6 months ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆32Updated 9 months ago
- ☆25Updated 3 years ago
- ☆31Updated 9 months ago
- Centromics: visualing centromeres with multiple omics data☆24Updated 7 months ago
- ☆38Updated 3 months ago
- This is a method to find telomeres and centromeres in plants.☆42Updated 2 years ago
- a Semi-automated pipeline for assembling T2T genome☆24Updated last week
- A genome assembly assessment pipeline.☆37Updated last year
- Reconstruction of ancestral genome maps☆16Updated 7 years ago
- The IntroBlocker ancestry inference algorithm☆16Updated 2 years ago
- ☆21Updated last year
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆10Updated 8 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated 2 years ago
- ☆24Updated last year
- HELIANO is a software for detection and classification of Helitron-like elements.☆31Updated 4 months ago
- ☆24Updated 2 years ago
- ☆12Updated 2 years ago
- A tool for performing collinearity-incorporating homology inference☆33Updated 2 years ago
- ☆40Updated 2 years ago
- Analyses of sex chromosome evolution in songbirds☆16Updated 6 years ago
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Updated 11 months ago
- The tools are used for displaying hic signal of genome☆24Updated 4 years ago
- ☆32Updated 7 months ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 6 years ago
- A tool for quick and accurate calculation of syntenic diversity.☆42Updated last month
- ☆13Updated this week
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆41Updated last month
- Inferring natural selection by comparative population genomic analysis across species☆25Updated last year
- ☆28Updated 3 years ago