Dynamic Elongation of a Genome Assembly Path
☆26Feb 25, 2026Updated last month
Alternatives and similar repositories for DEGAP
Users that are interested in DEGAP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a gap-filling tools of genome in complex region.☆25Dec 30, 2025Updated 2 months ago
- ☆24Updated this week
- ☆26Apr 22, 2025Updated 11 months ago
- ☆17Nov 19, 2025Updated 4 months ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆16Jul 25, 2021Updated 4 years ago
- use long sequenced reads to close gaps in assemblies☆41Sep 4, 2018Updated 7 years ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆166Oct 29, 2025Updated 5 months ago
- ☆22Feb 26, 2026Updated last month
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆15Sep 17, 2025Updated 6 months ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- ☆44Jul 23, 2025Updated 8 months ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆54Feb 27, 2020Updated 6 years ago
- ☆28Oct 20, 2023Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- An ultra-fast gzip file tools☆27Apr 25, 2024Updated last year
- A gap-closing software tool that uses long reads to enhance genome assembly.☆23Apr 25, 2024Updated last year
- A gap-closing software tool that uses long reads to enhance genome assembly.☆233Sep 6, 2024Updated last year
- ☆16Apr 3, 2023Updated 2 years ago
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆255Jan 5, 2026Updated 2 months ago
- Whole Genome Annotation Pipeline☆16Jun 20, 2025Updated 9 months ago
- ☆17Jan 14, 2026Updated 2 months ago
- Telomere compliment tools☆28Nov 17, 2025Updated 4 months ago
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆70Mar 23, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A tool for performing collinearity-incorporating homology inference☆33Oct 7, 2023Updated 2 years ago
- A complete telomere-to-telomere assembly of sheep: T2T-sheep1.0☆21Nov 2, 2024Updated last year
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- This is the standalone version of the EviAnn pipeline☆143Mar 13, 2026Updated 2 weeks ago
- Extracting paths from assembly graphs☆24Apr 26, 2024Updated last year
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Mar 5, 2023Updated 3 years ago
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆10Feb 26, 2025Updated last year
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated 10 months ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Apr 22, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Nov 22, 2019Updated 6 years ago
- a Semi-automated pipeline for assembling T2T genome☆25Oct 16, 2025Updated 5 months ago
- A novel genome assembly pipeline based on deep learning☆70Dec 2, 2024Updated last year
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Nov 23, 2025Updated 4 months ago
- SRF: Satellite Repeat Finder☆103Jan 8, 2024Updated 2 years ago
- ☆16Dec 25, 2024Updated last year
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated last year