A KMER-based genome-wIde Assocation testing approach on polyploids
☆72Jul 29, 2026Updated 3 months ago
Alternatives and similar repositories for KMERIA
Users that are interested in KMERIA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools for Gene Expression Quantification in Polyploid Species☆13Sep 29, 2025Updated last year
- ☆36Jun 24, 2026Updated 4 months ago
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on 3C-based data (Pore-C, CiFi, Hi-C, Omni-C).☆115Jul 23, 2026Updated 3 months ago
- A chromosome-level polyploid phasing scaffolding tool☆29Oct 19, 2026Updated 2 weeks ago
- AlleleFinder is a tool for identifying allele genes from polyploid genome.☆40May 29, 2026Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- CATG (Collinearity-based Assembly correcTor GUI) is a tool that can correct genome assembly with collinearity and generate tour files for…☆18Jan 24, 2026Updated 9 months ago
- Polyploid-aware, multiscale super-pangenome graph strategy☆20Oct 29, 2025Updated last year
- A haplotype-resolved and telomere-to-telomere genome assembly pipeline (PHap) tailored for autopolyploids, relying solely on common seque…☆31Jul 29, 2025Updated last year
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆288Aug 10, 2026Updated 2 months ago
- ☆29May 12, 2026Updated 5 months ago
- ☆27Jun 27, 2026Updated 4 months ago
- ☆23Aug 21, 2026Updated 2 months ago
- Polyploid allele identification☆12Jul 8, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆77Jun 4, 2026Updated 5 months ago
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆15Oct 1, 2021Updated 5 years ago
- Rapid alignment-free method for introgression screening and GWAS using k-mer profiles☆32Oct 27, 2026Updated last week
- a gap-filling tools of genome in complex region.☆27Dec 30, 2025Updated 10 months ago
- ☆34Apr 7, 2025Updated last year
- An Example of Subgenome Phasing for Complex Allopolyploidy☆17Nov 6, 2025Updated 11 months ago
- ☆23Aug 8, 2024Updated 2 years ago
- ☆17Feb 2, 2026Updated 9 months ago
- ☆11Aug 31, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A Tool for low Coverage HiFi Data Assembly☆44Dec 27, 2025Updated 10 months ago
- Telomere compliment tools☆28Nov 17, 2025Updated 11 months ago
- Benchmarking variant calling in polyploids☆16Nov 26, 2021Updated 4 years ago
- Deep Learning Framework for Transposable Element Discovery and Annotation☆12Aug 18, 2026Updated 2 months ago
- ☆12Jul 24, 2026Updated 3 months ago
- Classify chimeric reads based on unique kmer contents☆14Aug 30, 2026Updated 2 months ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆17Sep 17, 2025Updated last year
- A novel genome assembly pipeline based on deep learning☆71Dec 2, 2024Updated last year
- A library for running k-mers based GWAS☆131Oct 29, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- a Semi-automated pipeline for assembling T2T genome☆30Oct 16, 2025Updated last year
- Draw a dot plot from a paf alignment☆47May 9, 2026Updated 5 months ago
- ☆51Jul 23, 2025Updated last year
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆41Oct 17, 2026Updated 2 weeks ago
- Repository for scripts used in barley pan-genome graph construction with Minigraph☆15Oct 15, 2025Updated last year
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆53Sep 22, 2025Updated last year
- An ultra-fast and efficient genomic tool for coverage calculation☆174Jun 9, 2026Updated 4 months ago