Generate an interactive dot plot from mummer or minimap alignments
☆220Jan 17, 2024Updated 2 years ago
Alternatives and similar repositories for dotPlotly
Users that are interested in dotPlotly are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- k-mer based assembly evaluation☆354Jul 6, 2026Updated 3 months ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆932Sep 19, 2026Updated 3 weeks ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆213Nov 18, 2022Updated 3 years ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆250Sep 6, 2024Updated 2 years ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173May 30, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Tools for fast and flexible genome assembly scaffolding and improvement☆576Oct 1, 2026Updated last week
- haplotypic duplication identification tool☆296Oct 30, 2025Updated 11 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆70May 22, 2021Updated 5 years ago
- Synteny and Rearrangement Identifier☆492Jul 1, 2026Updated 3 months ago
- 3D de novo assembly (3D DNA) pipeline☆231Nov 29, 2023Updated 2 years ago
- Tool to plot synteny and structural rearrangements between genomes☆357Jul 27, 2026Updated 2 months ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆421Aug 25, 2026Updated last month
- Fast and accurately polish the genome generated by long reads.☆247Jan 9, 2025Updated last year
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆302Sep 23, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Draw a dot plot from a paf alignment☆47May 9, 2026Updated 5 months ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆180Oct 20, 2024Updated last year
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆468Jun 17, 2026Updated 3 months ago
- A genome completeness evaluation tool based on miniprot☆269Updated this week
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆816May 31, 2026Updated 4 months ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆26Oct 24, 2025Updated 11 months ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆17Sep 17, 2025Updated last year
- Evaluate variant calls and its combination with k-mer multiplicity☆73Dec 2, 2022Updated 3 years ago
- Dotplot large Genomes in an Interactive, Efficient and Simple way☆116Sep 30, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Fast genome analysis from unassembled short reads☆327Apr 8, 2024Updated 2 years ago
- Extensive de-novo TE Annotator☆470Sep 10, 2026Updated last month
- Long read / genome alignment software☆332Dec 16, 2025Updated 9 months ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆220Jun 30, 2026Updated 3 months ago
- Identify and find telomeres, or telomeric repeats in a genome.☆177Updated this week
- base-accurate DNA sequence alignments using WFA and mashmap3☆225Sep 28, 2026Updated 2 weeks ago
- Structural Variant Identification Method using Genome Assemblies☆147Sep 16, 2022Updated 4 years ago
- An accurate GFF3/GTF lift over pipeline☆559Aug 1, 2023Updated 3 years ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆114Nov 17, 2025Updated 10 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated 2 years ago
- ☆29Jul 16, 2022Updated 4 years ago
- Fast and accurate de novo assembler for long reads☆407May 10, 2024Updated 2 years ago
- Official home of genome aligner based upon notion of Cactus graphs☆713Updated this week
- General tools for genomic analyses.☆396Mar 25, 2026Updated 6 months ago
- Neural network classification of TE☆104Apr 3, 2026Updated 6 months ago
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆287Aug 10, 2026Updated 2 months ago