Generate an interactive dot plot from mummer or minimap alignments
☆219Jan 17, 2024Updated 2 years ago
Alternatives and similar repositories for dotPlotly
Users that are interested in dotPlotly are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- k-mer based assembly evaluation☆351Jul 6, 2026Updated 2 weeks ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆924Updated this week
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆213Nov 18, 2022Updated 3 years ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆243Sep 6, 2024Updated last year
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173May 30, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Tools for fast and flexible genome assembly scaffolding and improvement☆571Feb 14, 2024Updated 2 years ago
- haplotypic duplication identification tool☆291Oct 30, 2025Updated 8 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69May 22, 2021Updated 5 years ago
- Synteny and Rearrangement Identifier☆480Jul 1, 2026Updated 3 weeks ago
- 3D de novo assembly (3D DNA) pipeline☆228Nov 29, 2023Updated 2 years ago
- Tool to plot synteny and structural rearrangements between genomes☆349Apr 7, 2025Updated last year
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆404Apr 22, 2026Updated 3 months ago
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆297May 28, 2026Updated last month
- Fast and accurately polish the genome generated by long reads.☆243Jan 9, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Draw a dot plot from a paf alignment☆45May 9, 2026Updated 2 months ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆179Oct 20, 2024Updated last year
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆465Jun 17, 2026Updated last month
- A genome completeness evaluation tool based on miniprot☆254Updated this week
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆790May 31, 2026Updated last month
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆26Oct 24, 2025Updated 9 months ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆17Sep 17, 2025Updated 10 months ago
- Evaluate variant calls and its combination with k-mer multiplicity☆70Dec 2, 2022Updated 3 years ago
- Dotplot large Genomes in an Interactive, Efficient and Simple way☆116Jun 8, 2026Updated last month
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Fast genome analysis from unassembled short reads☆324Apr 8, 2024Updated 2 years ago
- Extensive de-novo TE Annotator☆463Jul 16, 2026Updated last week
- Long read / genome alignment software☆329Dec 16, 2025Updated 7 months ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆217Jun 30, 2026Updated 3 weeks ago
- Identify and find telomeres, or telomeric repeats in a genome.☆171Nov 24, 2025Updated 8 months ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆220Jun 21, 2026Updated last month
- Structural Variant Identification Method using Genome Assemblies☆145Sep 16, 2022Updated 3 years ago
- An accurate GFF3/GTF lift over pipeline☆547Aug 1, 2023Updated 2 years ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆114Nov 17, 2025Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated 2 years ago
- ☆29Jul 16, 2022Updated 4 years ago
- Official home of genome aligner based upon notion of Cactus graphs☆697Updated this week
- Fast and accurate de novo assembler for long reads☆405May 10, 2024Updated 2 years ago
- General tools for genomic analyses.☆393Mar 25, 2026Updated 3 months ago
- Neural network classification of TE☆100Apr 3, 2026Updated 3 months ago
- A fast approximate aligner for long DNA sequences☆288Oct 11, 2024Updated last year