Generate an interactive dot plot from mummer or minimap alignments
☆217Jan 17, 2024Updated 2 years ago
Alternatives and similar repositories for dotPlotly
Users that are interested in dotPlotly are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- k-mer based assembly evaluation☆343Updated this week
- Python library to facilitate genome assembly, annotation, and comparative genomics☆909May 2, 2026Updated 3 weeks ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆210Nov 18, 2022Updated 3 years ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆174May 30, 2021Updated 4 years ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆239Sep 6, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Tools for fast and flexible genome assembly scaffolding and improvement☆563Feb 14, 2024Updated 2 years ago
- haplotypic duplication identification tool☆285Oct 30, 2025Updated 6 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69May 22, 2021Updated 5 years ago
- Synteny and Rearrangement Identifier☆468Updated this week
- 3D de novo assembly (3D DNA) pipeline☆225Nov 29, 2023Updated 2 years ago
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on 3C-based data (Pore-C, CiFi, Hi-C, Omni-C).☆94May 7, 2026Updated 2 weeks ago
- Tool to plot synteny and structural rearrangements between genomes☆348Apr 7, 2025Updated last year
- Fast and accurately polish the genome generated by long reads.☆243Jan 9, 2025Updated last year
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆294Feb 25, 2026Updated 3 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆391Apr 22, 2026Updated last month
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆179Oct 20, 2024Updated last year
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆460Apr 12, 2026Updated last month
- A genome completeness evaluation tool based on miniprot☆242Sep 18, 2025Updated 8 months ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆775May 15, 2026Updated last week
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆26Oct 24, 2025Updated 7 months ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆17Sep 17, 2025Updated 8 months ago
- Evaluate variant calls and its combination with k-mer multiplicity☆68Dec 2, 2022Updated 3 years ago
- Dotplot large Genomes in an Interactive, Efficient and Simple way☆114Apr 1, 2026Updated last month
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Fast genome analysis from unassembled short reads☆320Apr 8, 2024Updated 2 years ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆215May 12, 2026Updated last week
- Extensive de-novo TE Annotator☆446May 12, 2026Updated last week
- Long read / genome alignment software☆317Dec 16, 2025Updated 5 months ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆108Nov 17, 2025Updated 6 months ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆217Mar 20, 2026Updated 2 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated 2 years ago
- An accurate GFF3/GTF lift over pipeline☆539Aug 1, 2023Updated 2 years ago
- Structural Variant Identification Method using Genome Assemblies☆142Sep 16, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆29Jul 16, 2022Updated 3 years ago
- Fast and accurate de novo assembler for long reads☆402May 10, 2024Updated 2 years ago
- A fast approximate aligner for long DNA sequences☆288Oct 11, 2024Updated last year
- Official home of genome aligner based upon notion of Cactus graphs☆678May 15, 2026Updated last week
- Neural network classification of TE☆99Apr 3, 2026Updated last month
- General tools for genomic analyses.☆390Mar 25, 2026Updated last month
- Mummer alignment tool☆558Feb 4, 2025Updated last year