sc-zhang / AlleleFinder
AlleleFinder is a tool for identifying allele genes from polyploid genome.
☆24Updated last month
Alternatives and similar repositories for AlleleFinder:
Users that are interested in AlleleFinder are comparing it to the libraries listed below
- ☆28Updated 5 months ago
- ☆37Updated last year
- ☆22Updated 2 years ago
- ☆25Updated 3 years ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆37Updated 7 months ago
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆18Updated 10 months ago
- ☆29Updated 3 weeks ago
- HiCAT new project☆27Updated last year
- A genome assembly assessment pipeline.☆37Updated last year
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 3 years ago
- This is a method to find telomeres and centromeres in plants.☆37Updated last year
- Centromics: visualing centromeres with multiple omics data☆17Updated last year
- Dynamic Elongation of a Genome Assembly Path☆20Updated 8 months ago
- ☆20Updated 5 months ago
- ☆28Updated 8 months ago
- A tool for performing collinearity-incorporating homology inference☆28Updated last year
- Pan-genome Construction and Population Structure Variation Calling pipeline☆36Updated 4 months ago
- use long sequenced reads to close gaps in assemblies☆36Updated 6 years ago
- ☆27Updated 2 years ago
- Plant genome assembly and annotation pipeline using snakemake☆37Updated last year
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- A tool for quick and accurate calculation of syntenic diversity.☆33Updated last week
- Centromics: visualing centromeres with multiple omics data☆22Updated 2 months ago
- ☆19Updated 2 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆30Updated 4 months ago
- BITACORA: A Bioinformatics tool for gene family annotation☆44Updated 9 months ago
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Updated 6 years ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆65Updated 3 years ago
- ☆21Updated 11 months ago
- Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…☆17Updated 7 months ago