sc-zhang / AlleleFinder
AlleleFinder is a tool for identifying allele genes from polyploid genome.
☆28Updated 4 months ago
Alternatives and similar repositories for AlleleFinder
Users that are interested in AlleleFinder are comparing it to the libraries listed below
Sorting:
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C/CiFi or Hi-C.☆35Updated this week
- Plant genome assembly and annotation pipeline using snakemake☆44Updated last year
- ☆40Updated last year
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆67Updated 3 years ago
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- A novel genome assembly pipeline based on deep learning☆62Updated 5 months ago
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆28Updated 2 months ago
- ☆29Updated 4 months ago
- This is a method to find telomeres and centromeres in plants.☆40Updated last year
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆32Updated 7 months ago
- ☆29Updated 8 months ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆38Updated 8 months ago
- a Semi-automated pipeline for assembling T2T genome☆17Updated 3 weeks ago
- ☆25Updated 3 years ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆32Updated this week
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- scripts used in Rice Pangenome Projects (Evolution).☆10Updated last year
- Genome haplotype assembly and assessment method☆12Updated last year
- A tool for performing collinearity-incorporating homology inference☆31Updated last year
- Centromics: visualing centromeres with multiple omics data☆18Updated last year
- zgtools: A pipeline that allows for the convenient acquisition of T2T (Telomere-to-Telomere) genomes.☆29Updated 3 weeks ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆41Updated last month
- ☆20Updated 3 years ago
- This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.☆24Updated last year
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆44Updated last year
- Dynamic Elongation of a Genome Assembly Path☆21Updated last year
- HiCAT new project☆27Updated last year
- a software for annotating plant genes☆21Updated last year
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆18Updated 2 years ago