AlleleFinder is a tool for identifying allele genes from polyploid genome.
☆40May 29, 2026Updated 2 weeks ago
Alternatives and similar repositories for AlleleFinder
Users that are interested in AlleleFinder are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CATG (Collinearity-based Assembly correcTor GUI) is a tool that can correct genome assembly with collinearity and generate tour files for…☆18Jan 24, 2026Updated 4 months ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆17Sep 17, 2025Updated 9 months ago
- A plot package for bioinformatics☆29Jan 24, 2026Updated 4 months ago
- several scripts for bioinformatics☆25Nov 27, 2025Updated 6 months ago
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on 3C-based data (Pore-C, CiFi, Hi-C, Omni-C).☆99May 7, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆35Mar 19, 2025Updated last year
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆25Jan 21, 2026Updated 4 months ago
- ☆32Apr 7, 2025Updated last year
- Some components that speed up and reduce resource cost for original ALLHiC☆15Jun 21, 2025Updated 11 months ago
- ☆87Jul 12, 2024Updated last year
- A KMER-based genome-wIde Assocation testing approach on polyploids☆50Updated this week
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 5 years ago
- A pipeline used to identify different modes of duplicated gene pairs☆120Jul 22, 2025Updated 10 months ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆179Oct 20, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- Centromics: visualing centromeres with multiple omics data☆27Mar 4, 2025Updated last year
- An integrated package to process diploid Hi-C data☆17Dec 9, 2021Updated 4 years ago
- A tool for performing collinearity-incorporating homology inference☆33Oct 7, 2023Updated 2 years ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆23May 16, 2026Updated last month
- Python implementation of barrnap (Bacterial ribosomal RNA predictor)☆27Updated this week
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆14Oct 1, 2021Updated 4 years ago
- Fast and frugal disk based k-mer counter☆14Apr 1, 2021Updated 5 years ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69May 22, 2021Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆271Jan 5, 2026Updated 5 months ago
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆73Jun 4, 2026Updated 2 weeks ago
- Domain based annotation of transposable elements☆23Oct 8, 2025Updated 8 months ago
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆166Nov 4, 2025Updated 7 months ago
- Yet another Hi-C scaffolding tool☆181Nov 4, 2024Updated last year
- Python library to facilitate genome assembly, annotation, and comparative genomics☆918May 2, 2026Updated last month
- a gap-filling tools of genome in complex region.☆26Dec 30, 2025Updated 5 months ago
- Centromics: visualing centromeres with multiple omics data☆21Jan 18, 2024Updated 2 years ago
- The tools are used for displaying hic signal of genome☆26Jan 4, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Benchmarking variant calling in polyploids☆16Nov 26, 2021Updated 4 years ago
- tomato graph pangenome☆92Dec 13, 2022Updated 3 years ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Apr 28, 2020Updated 6 years ago
- This is a tool for speculation of ancestral allel, calculation of sfs and drawing its bar plot. It is easy-to-use and runing fast. What y…☆11Dec 16, 2022Updated 3 years ago
- ☆11Sep 4, 2024Updated last year
- Portable solution to generate genome alignment chains using lastz☆66Updated this week
- Generate an interactive dot plot from mummer or minimap alignments☆219Jan 17, 2024Updated 2 years ago