☆16Oct 8, 2026Updated last week
Alternatives and similar repositories for puzzle-hi-c
Users that are interested in puzzle-hi-c are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The tools are used for displaying hic signal of genome☆25Jan 4, 2021Updated 5 years ago
- Robust Eukaryotic Annotation Toolkit☆17Feb 28, 2025Updated last year
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆28May 18, 2024Updated 2 years ago
- Yet another Hi-C scaffolding tool☆184Nov 4, 2024Updated last year
- Tool for globally phasing diploid assembly graphs with orthogonal data☆43Nov 25, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆39Mar 5, 2023Updated 3 years ago
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆12Dec 7, 2022Updated 3 years ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- ☆45Dec 11, 2025Updated 10 months ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- ☆42May 19, 2025Updated last year
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on 3C-based data (Pore-C, CiFi, Hi-C, Omni-C).☆115Jul 23, 2026Updated 2 months ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated last year
- An effective alignment tool for long noisy 3C data (e.g. Pore-C and C-walk)☆16Oct 23, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆16Apr 3, 2023Updated 3 years ago
- ☆12Jun 7, 2024Updated 2 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆38Apr 23, 2025Updated last year
- A tool for visualization of pairwise alignments of multiple sequences☆19Aug 12, 2025Updated last year
- convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region☆13May 21, 2024Updated 2 years ago
- gghic makes visualization of Hi-C/-like data easily in R☆29Jan 23, 2026Updated 8 months ago
- ☆29Jul 16, 2022Updated 4 years ago
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- An ultra-fast gzip file tools☆29Jun 23, 2026Updated 3 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…☆26Mar 11, 2023Updated 3 years ago
- Portable solution to generate genome alignment chains using lastz☆74Sep 4, 2026Updated last month
- Centromics: visualing centromeres with multiple omics data☆28Mar 4, 2025Updated last year
- R package to draw syntenic plots in 3 different styles☆47Feb 2, 2026Updated 8 months ago
- Dynamic Elongation of a Genome Assembly Path☆31Jul 27, 2026Updated 2 months ago
- ☆28Mar 23, 2024Updated 2 years ago
- A Hi-C scaffolding method☆22Dec 22, 2021Updated 4 years ago
- ☆27Jun 27, 2026Updated 3 months ago
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆287Aug 10, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Apr 28, 2020Updated 6 years ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆32Oct 3, 2026Updated 2 weeks ago
- Genome annotation pre-publication results☆42Updated this week
- Code for assembly approach presented in "Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspri…☆15Nov 20, 2023Updated 2 years ago
- tool for dating gene age by micro- and macro-synteny with high speed and accuracy☆18Jan 3, 2026Updated 9 months ago
- Whole-genome bioinformatic pipeline for pooled or individual-based NGS data using bash and R☆21Mar 5, 2022Updated 4 years ago
- ☆25Sep 22, 2026Updated 3 weeks ago