linguoliang / puzzle-hi-cView external linksLinks
☆16Dec 25, 2024Updated last year
Alternatives and similar repositories for puzzle-hi-c
Users that are interested in puzzle-hi-c are comparing it to the libraries listed below
Sorting:
- The tools are used for displaying hic signal of genome☆24Jan 4, 2021Updated 5 years ago
- Robust Eukaryotic Annotation Toolkit☆18Feb 28, 2025Updated 11 months ago
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C/CiFi or Hi-C.☆87Jan 25, 2026Updated 3 weeks ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆26May 18, 2024Updated last year
- Tool for globally phasing diploid assembly graphs with orthogonal data☆43Nov 25, 2024Updated last year
- Yet another Hi-C scaffolding tool☆170Nov 4, 2024Updated last year
- ☆16Apr 3, 2023Updated 2 years ago
- ☆41May 19, 2025Updated 8 months ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated last year
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Mar 5, 2023Updated 2 years ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- ☆29Jul 16, 2022Updated 3 years ago
- ☆16Nov 19, 2025Updated 2 months ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated 9 months ago
- Genome annotation pre-publication results☆25Dec 22, 2025Updated last month
- ☆24Apr 22, 2025Updated 9 months ago
- Dynamic Elongation of a Genome Assembly Path☆25Dec 15, 2025Updated 2 months ago
- SINE annotation tool for plant genomes☆18Jan 21, 2024Updated 2 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Apr 23, 2025Updated 9 months ago
- An ultra-fast gzip file tools☆27Apr 25, 2024Updated last year
- ☆12Jun 7, 2024Updated last year
- ☆26Mar 23, 2024Updated last year
- convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region☆13May 21, 2024Updated last year
- Some components that speed up and reduce resource cost for original ALLHiC☆14Jun 21, 2025Updated 7 months ago
- Interspecies Point Projection - A tool for comparative genomics beyond alignable sequence☆23Feb 9, 2026Updated last week
- An effective alignment tool for long noisy 3C data (e.g. Pore-C and C-walk)☆14Oct 23, 2024Updated last year
- ☆45Dec 11, 2025Updated 2 months ago
- Centromics: visualing centromeres with multiple omics data☆25Mar 4, 2025Updated 11 months ago
- ☆27Oct 20, 2023Updated 2 years ago
- EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…☆25Mar 11, 2023Updated 2 years ago
- A Hi-C scaffolding method☆22Dec 22, 2021Updated 4 years ago
- Portable solution to generate genome alignment chains using lastz☆60Dec 20, 2025Updated last month
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆15Sep 17, 2025Updated 5 months ago
- R package to draw syntenic plots in 3 different styles☆45Feb 2, 2026Updated 2 weeks ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Apr 28, 2020Updated 5 years ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆43Jan 14, 2026Updated last month
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆254Jan 5, 2026Updated last month
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69May 22, 2021Updated 4 years ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆30Nov 9, 2025Updated 3 months ago