☆16Apr 16, 2026Updated 3 weeks ago
Alternatives and similar repositories for puzzle-hi-c
Users that are interested in puzzle-hi-c are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The tools are used for displaying hic signal of genome☆25Jan 4, 2021Updated 5 years ago
- Robust Eukaryotic Annotation Toolkit☆17Feb 28, 2025Updated last year
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on 3C-based data (Pore-C, CiFi, Hi-C，Omni-C).☆93Jan 25, 2026Updated 3 months ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆27May 18, 2024Updated last year
- Tool for globally phasing diploid assembly graphs with orthogonal data☆43Nov 25, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Yet another Hi-C scaffolding tool☆180Nov 4, 2024Updated last year
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Mar 5, 2023Updated 3 years ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated 11 months ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- ☆42May 19, 2025Updated 11 months ago
- ☆16Apr 3, 2023Updated 3 years ago
- Interspecies Point Projection - A tool for comparative genomics beyond alignable sequence☆26Apr 16, 2026Updated 3 weeks ago
- ☆12Jun 7, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆37Apr 23, 2025Updated last year
- convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region☆13May 21, 2024Updated last year
- ☆29Jul 16, 2022Updated 3 years ago
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- An effective alignment tool for long noisy 3C data (e.g. Pore-C and C-walk)☆16Oct 23, 2024Updated last year
- Genome annotation pre-publication results☆27Updated this week
- ☆45Dec 11, 2025Updated 4 months ago
- A tool for visualization of pairwise alignments of multiple sequences☆19Aug 12, 2025Updated 8 months ago
- An ultra-fast gzip file tools☆27Apr 25, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…☆26Mar 11, 2023Updated 3 years ago
- Centromics: visualing centromeres with multiple omics data☆25Mar 4, 2025Updated last year
- Dynamic Elongation of a Genome Assembly Path☆25Apr 29, 2026Updated last week
- ☆26Apr 22, 2025Updated last year
- R package to draw syntenic plots in 3 different styles☆46Feb 2, 2026Updated 3 months ago
- Portable solution to generate genome alignment chains using lastz☆64Apr 6, 2026Updated last month
- ☆26Mar 23, 2024Updated 2 years ago
- A Hi-C scaffolding method☆22Dec 22, 2021Updated 4 years ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Apr 28, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆19Nov 19, 2025Updated 5 months ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆31Nov 9, 2025Updated 6 months ago
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆267Jan 5, 2026Updated 4 months ago
- Code for assembly approach presented in "Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspri…☆14Nov 20, 2023Updated 2 years ago
- Some components that speed up and reduce resource cost for original ALLHiC☆15Jun 21, 2025Updated 10 months ago
- This is the standalone version of the EviAnn pipeline☆145Apr 24, 2026Updated 2 weeks ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆17Sep 17, 2025Updated 7 months ago