Alternatives and similar repositories for LTR-insertion-time-estimation:

Users that are interested in LTR-insertion-time-estimation are comparing it to the libraries listed below

• HuiyangYu / HFKReads
  An ultra-fast and efficient tool for high frequency kmer sequencing reads extraction
  ☆19Updated last year
• NBISweden / TransposonPSI
  TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…
  ☆13Updated 4 years ago
• ChenHuaLab / CEGA
  Inferring natural selection by comparative population genomic analysis across species
  ☆23Updated last year
• zhangrengang / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆22Updated 2 weeks ago
• xiekunwhy / kmerDedup
  Reduce genome assembly redundancy using shared mapped k-mer method.
  ☆13Updated 11 months ago
• sc-zhang / ALLHiC_extensions
  Some components that speed up and reduce resource cost for original ALLHiC
  ☆12Updated last year
• WarrenLab / chicken-pangenome-paper
  Scripts used to perform analyses in Rice et al. (2023)
  ☆15Updated last year
• Kirovez / pyTanFinder
  Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results
  ☆12Updated 6 years ago
• Atvar2 / plotHicGenome
  The tools are used for displaying hic signal of genome
  ☆23Updated 4 years ago
• Jianwei-Zhang / DEGAP
  Dynamic Elongation of a Genome Assembly Path
  ☆21Updated 10 months ago
• yilinZhang-bio / Watermelon-pangenome
  ☆21Updated last year
• tangerzhang / calc_switchErr
  ☆27Updated 3 years ago
• jkimlab / DESCHRAMBLER
  ☆22Updated last year
• SwallowGenomics / BarnSwallow
  ☆12Updated 2 years ago
• LAILAB-CAU / update-Mo17
  ☆23Updated last year
• Adamtaranto / TRF2GFF
  Convert Tandem Repeat Finder dat file output into gff3 format
  ☆25Updated 2 months ago
• yangli557 / AnnoSINE
  SINE annotation tool for plant genomes
  ☆17Updated last year
• andreaminio / HaploSync
  Tools for haplotype-wise reconstruction of pseudomolecules
  ☆20Updated 5 months ago
• cchauve / ANGeS
  Reconstruction of ancestral genome maps
  ☆16Updated 6 years ago
• linguoliang / puzzle-hi-c
  ☆16Updated 2 months ago
• noecochetel / North_American_Vitis_Pangenome
  Construct and Analyze the North American Vitis pangenome
  ☆22Updated last year
• lardo / khaper
  ☆27Updated 2 years ago
• shingocat / syntenyPlotByR
  plot genome alignment synteny
  ☆21Updated 4 years ago
• Wenfei-Xian / TIPP
  Telomere local assembly, Improved whole genome polish, and Plastid assembly
  ☆17Updated last month
• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆29Updated last year
• legumeinfo / pandagma
  Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.
  ☆17Updated 3 weeks ago
• ChenHuaLab / Beta-PSMC
  ☆12Updated 5 years ago
• zhangrengang / SOI
  Robust identification of orthologous Synteny with the Orthology Index
  ☆13Updated 2 weeks ago
• amsession / Kmer-based-Subgenome-Mapping
  ☆20Updated 7 months ago