Using Deep Learning to predict gene annotations
☆308Oct 6, 2026Updated this week
Alternatives and similar repositories for Helixer
Users that are interested in Helixer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This is the standalone version of the EviAnn pipeline☆187Updated this week
- ☆160Aug 11, 2026Updated 2 months ago
- Tiberius is a deep learning gene finder.☆141Updated this week
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆149Apr 13, 2026Updated 5 months ago
- Yet another Hi-C scaffolding tool☆183Nov 4, 2024Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆211Sep 28, 2026Updated last week
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆287Aug 10, 2026Updated 2 months ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆468Jun 17, 2026Updated 3 months ago
- A genome completeness evaluation tool based on miniprot☆267Aug 17, 2026Updated last month
- Identify and find telomeres, or telomeric repeats in a genome.☆177Updated this week
- Repeat-aware polishing genomes assembled using HiFi long reads☆105Apr 7, 2026Updated 6 months ago
- Align proteins to genomes with splicing and frameshift☆423Jan 5, 2026Updated 9 months ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆250Sep 6, 2024Updated 2 years ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆421Aug 25, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- k-mer based assembly evaluation☆354Jul 6, 2026Updated 3 months ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆816May 31, 2026Updated 4 months ago
- ☆94Jul 31, 2026Updated 2 months ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆188Jun 23, 2026Updated 3 months ago
- A organelle de novo genome assembly toolkit☆85Feb 22, 2025Updated last year
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆211Nov 23, 2025Updated 10 months ago
- Extensive de-novo TE Annotator☆470Sep 10, 2026Updated last month
- ☆33Sep 29, 2026Updated last week
- Synteny and Rearrangement Identifier☆491Jul 1, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- High-precision TE Annotator☆165Dec 4, 2025Updated 10 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆576Oct 1, 2026Updated last week
- BRAKER re-implemented with snakemake☆88Updated this week
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆588Sep 7, 2026Updated last month
- RepeatIdentifier☆75Mar 19, 2025Updated last year
- ☆50Jul 23, 2025Updated last year
- Make colorful identity heatmaps of genomic sequence☆140May 24, 2024Updated 2 years ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆932Sep 19, 2026Updated 3 weeks ago
- Tool to plot synteny and structural rearrangements between genomes☆357Jul 27, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- haplotypic duplication identification tool☆296Oct 30, 2025Updated 11 months ago
- An accurate GFF3/GTF lift over pipeline☆559Aug 1, 2023Updated 3 years ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆132Sep 25, 2026Updated 2 weeks ago
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 3 years ago
- Constructing a pangenome gene graph☆212Aug 11, 2025Updated last year
- A tool for performing collinearity-incorporating homology inference☆34Jul 17, 2026Updated 2 months ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago