usadellab / HelixerLinks
Using Deep Learning to predict gene annotations
☆227Updated 2 weeks ago
Alternatives and similar repositories for Helixer
Users that are interested in Helixer are comparing it to the libraries listed below
Sorting:
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆164Updated 3 months ago
- Tool to plot synteny and structural rearrangements between genomes☆326Updated 6 months ago
- 3D de novo assembly (3D DNA) pipeline☆218Updated last year
- ☆218Updated 9 months ago
- Fast and accurately polish the genome generated by long reads.☆234Updated 9 months ago
- ☆216Updated last month
- A bioinformatics tool for working with modified bases☆220Updated last month
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆142Updated 3 months ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆282Updated 8 months ago
- Any Way to Show Multi genomic Synteny☆209Updated 3 months ago
- Earl Grey: A fully automated TE curation and annotation pipeline☆183Updated last month
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆173Updated last year
- Oxford Nanopore Technologies fast5 API software☆154Updated last year
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆271Updated 3 weeks ago
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆309Updated last month
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆276Updated last month
- Ultra-fast preprocessing and quality control for long-read sequencing data☆191Updated last month
- PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. Please report only **techni…☆174Updated last month
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆195Updated last month
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆196Updated 4 months ago
- the pangenome graph builder☆458Updated 2 months ago
- Synteny and Rearrangement Identifier☆419Updated 6 months ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆365Updated last month
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆234Updated last week
- Version 5 of the CAFE phylogenetics software☆148Updated 8 months ago
- Whole Genome Alignment Tools☆210Updated last week
- Nanopore demultiplexing, QC and alignment pipeline☆213Updated 2 weeks ago
- Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.☆234Updated 2 years ago
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆231Updated 2 weeks ago
- An ultra-fast and efficient genomic tool for coverage calculation☆159Updated 7 months ago