usadellab / HelixerLinks
Using Deep Learning to predict gene annotations
☆275Updated this week
Alternatives and similar repositories for Helixer
Users that are interested in Helixer are comparing it to the libraries listed below
Sorting:
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆181Updated last month
- Tool to plot synteny and structural rearrangements between genomes☆340Updated 10 months ago
- 3D de novo assembly (3D DNA) pipeline☆221Updated 2 years ago
- ☆231Updated last week
- Fast and accurately polish the genome generated by long reads.☆240Updated last year
- PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. Please report only **techni…☆183Updated last week
- ☆232Updated last year
- Any Way to Show Multi genomic Synteny☆217Updated 7 months ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆285Updated last year
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆178Updated 2 years ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆142Updated 6 months ago
- A bioinformatics tool for working with modified bases☆247Updated 3 weeks ago
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆330Updated 4 months ago
- Earl Grey: A fully automated TE curation and annotation pipeline☆192Updated 3 weeks ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆381Updated last week
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆290Updated last month
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆275Updated 4 months ago
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆199Updated last week
- Eukaryotic Genome Annotation Pipeline☆378Updated 2 weeks ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆218Updated 5 months ago
- Whole Genome Alignment Tools☆213Updated 3 months ago
- the pangenome graph builder☆477Updated 2 months ago
- An ultra-fast and efficient genomic tool for coverage calculation☆169Updated 10 months ago
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆118Updated 7 months ago
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆203Updated 2 months ago
- Synteny and Rearrangement Identifier☆446Updated 9 months ago
- a tool for inferring species tree from sequencing reads☆156Updated 2 months ago
- Tandem Repeats Finder: a program to analyze DNA sequences☆198Updated 3 years ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆215Updated 7 months ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆245Updated 5 years ago