Alternatives and similar repositories for quarTeT:

Users that are interested in quarTeT are comparing it to the libraries listed below

• huangnengCSU / compleasm
  A genome completeness evaluation tool based on miniprot
  ☆190Updated 4 months ago
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆174Updated 3 weeks ago
• YaoZhou89 / TGG
  tomato graph pangenome
  ☆79Updated 2 years ago
• TobyBaril / EarlGrey
  Earl Grey: A fully automated TE curation and annotation pipeline
  ☆155Updated last week
• hewm2008 / NGenomeSyn
  Any Way to Show Multi genomic Synteny
  ☆173Updated 3 months ago
• CSU-KangHu / HiTE
  High-precision TE Annotator
  ☆90Updated this week
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆143Updated 2 years ago
• SunPengChuan / wgdi
  WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes
  ☆134Updated last month
• zhangrengang / TEsorter
  TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes
  ☆90Updated last week
• c-zhou / yahs
  Yet another Hi-C scaffolding tool
  ☆139Updated 3 months ago
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆195Updated last year
• dfguan / purge_dups
  haplotypic duplication identification tool
  ☆220Updated last year
• Nextomics / NextPolish
  Fast and accurately polish the genome generated by long reads.
  ☆217Updated last month
• qiao-xin / DupGen_finder
  A pipeline used to identify different modes of duplicated gene pairs
  ☆95Updated 4 years ago
• tangerzhang / ALLHiC
  ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data
  ☆174Updated 3 months ago
• zengxiaofei / HapHiC
  HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data
  ☆165Updated 3 weeks ago
• oushujun / LTR_retriever
  LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…
  ☆195Updated last month
• BGI-Qingdao / TGS-GapCloser
  A gap-closing software tool that uses long reads to enhance genome assembly.
  ☆191Updated 5 months ago
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆172Updated 3 years ago
• chenlianfu / geta
  ☆73Updated 7 months ago
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆121Updated this week
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆179Updated 7 months ago
• hahnlab / CAFE5
  Version 5 of the CAFE phylogenetics software
  ☆121Updated this week
• RemiAllio / MitoFinder
  MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
  ☆96Updated 10 months ago
• tbenavi1 / genomescope2.0
  Reference-free profiling of polyploid genomes
  ☆112Updated 7 months ago
• arangrhie / T2T-Polish
  Evaluation and polishing workflows for T2T genome assemblies
  ☆119Updated 4 months ago
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆77Updated last week
• Gabaldonlab / redundans
  Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
  ☆137Updated last year
• tolkit / telomeric-identifier
  Identify and find telomeres, or telomeric repeats in a genome.
  ☆117Updated last week
• MariaNattestad / Assemblytics
  Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…
  ☆140Updated 3 months ago