aaranyue / quarTeTLinks
A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification
☆157Updated 3 weeks ago
Alternatives and similar repositories for quarTeT
Users that are interested in quarTeT are comparing it to the libraries listed below
Sorting:
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆151Updated 2 weeks ago
- A genome completeness evaluation tool based on miniprot☆228Updated 2 months ago
- High-precision TE Annotator☆137Updated 3 weeks ago
- Fast and accurately polish the genome generated by long reads.☆234Updated 10 months ago
- Identify and find telomeres, or telomeric repeats in a genome.☆149Updated 4 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆190Updated 6 months ago
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆179Updated last month
- Nanopore data assembler☆161Updated 3 years ago
- Any Way to Show Multi genomic Synteny☆210Updated 4 months ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆177Updated last year
- A gap-closing software tool that uses long reads to enhance genome assembly.☆221Updated last year
- haplotypic duplication identification tool☆266Updated 3 weeks ago
- Yet another Hi-C scaffolding tool☆163Updated last year
- A pipeline used to identify different modes of duplicated gene pairs☆110Updated 3 months ago
- Version 5 of the CAFE phylogenetics software☆151Updated 9 months ago
- Earl Grey: A fully automated TE curation and annotation pipeline☆186Updated 2 months ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆214Updated 4 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆210Updated last year
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆240Updated 3 weeks ago
- Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.☆161Updated 7 months ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆147Updated 9 months ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆100Updated this week
- ☆172Updated last month
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆106Updated last week
- Evaluation and polishing workflows for T2T genome assemblies☆139Updated 4 months ago
- source code for EVM☆118Updated 11 months ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 4 years ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆111Updated 2 months ago
- This is the standalone version of the EviAnn pipeline☆127Updated this week
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆165Updated 4 months ago