☆119Oct 10, 2025Updated 6 months ago
Alternatives and similar repositories for LJA
Users that are interested in LJA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆387Apr 10, 2026Updated last week
- Tool for globally phasing diploid assembly graphs with orthogonal data☆43Nov 25, 2024Updated last year
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- ☆42May 19, 2025Updated 11 months ago
- ☆67Apr 9, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- PECAT, a phased error correct and assembly tool☆62Dec 8, 2025Updated 4 months ago
- Close assembly gaps using long-reads at high accuracy.☆51Feb 20, 2024Updated 2 years ago
- ☆59Dec 12, 2023Updated 2 years ago
- Efficient low-divergence mapping of long reads in minimizer space☆69Oct 7, 2023Updated 2 years ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- Identify and find telomeres, or telomeric repeats in a genome.☆164Nov 24, 2025Updated 4 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆48Feb 23, 2021Updated 5 years ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆194May 11, 2025Updated 11 months ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆215Mar 20, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Constructing a pangenome gene graph☆206Aug 11, 2025Updated 8 months ago
- Yet another k-mer analyzer☆167Dec 30, 2025Updated 3 months ago
- Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.☆10Updated this week
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- 🪡Correct and scaffold assemblies using long reads☆57Apr 1, 2026Updated 2 weeks ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆766Updated this week
- A fast K-mer counter for high-fidelity shotgun datasets☆142Jan 19, 2026Updated 2 months ago
- ☆78Jun 12, 2020Updated 5 years ago
- haplotypic duplication identification tool☆280Oct 30, 2025Updated 5 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆112Feb 28, 2026Updated last month
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆210Nov 18, 2022Updated 3 years ago
- De novo assembly from Oxford Nanopore reads.☆89Feb 16, 2026Updated 2 months ago
- Sequence-to-graph mapper and graph generator☆475Aug 11, 2025Updated 8 months ago
- SRF: Satellite Repeat Finder☆102Jan 8, 2024Updated 2 years ago
- Yet another Hi-C scaffolding tool☆178Nov 4, 2024Updated last year
- k-mer based assembly evaluation☆340Jun 28, 2024Updated last year
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆160Apr 10, 2026Updated last week
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆273Oct 13, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A gap-closing software tool that uses long reads to enhance genome assembly.☆234Sep 6, 2024Updated last year
- Evaluating genome assemblies☆119Mar 3, 2026Updated last month
- Assembled Genomes Compressor☆179Mar 26, 2026Updated 3 weeks ago
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆205Nov 23, 2025Updated 4 months ago
- An accurate GFF3/GTF lift over pipeline☆532Aug 1, 2023Updated 2 years ago
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆35Mar 5, 2026Updated last month
- assembly evaluation tool☆35May 11, 2022Updated 3 years ago