AntonBankevich / LJAView external linksLinks
☆119Oct 10, 2025Updated 4 months ago
Alternatives and similar repositories for LJA
Users that are interested in LJA are comparing it to the libraries listed below
Sorting:
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆381Feb 6, 2026Updated last week
- Tool for globally phasing diploid assembly graphs with orthogonal data☆43Nov 25, 2024Updated last year
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- PECAT, a phased error correct and assembly tool☆59Dec 8, 2025Updated 2 months ago
- ☆67Apr 9, 2024Updated last year
- ☆41May 19, 2025Updated 8 months ago
- 🪡Correct and scaffold assemblies using long reads☆57Sep 4, 2025Updated 5 months ago
- Efficient low-divergence mapping of long reads in minimizer space☆70Oct 7, 2023Updated 2 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Feb 23, 2021Updated 4 years ago
- Close assembly gaps using long-reads at high accuracy.☆50Feb 20, 2024Updated last year
- base-accurate DNA sequence alignments using WFA and mashmap3☆210Jan 30, 2026Updated 2 weeks ago
- ☆58Dec 12, 2023Updated 2 years ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆191May 11, 2025Updated 9 months ago
- Identify and find telomeres, or telomeric repeats in a genome.☆158Nov 24, 2025Updated 2 months ago
- Yet another Hi-C scaffolding tool☆170Nov 4, 2024Updated last year
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆110Jan 26, 2026Updated 3 weeks ago
- Yet another k-mer analyzer☆160Dec 30, 2025Updated last month
- Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.☆10Jan 27, 2026Updated 2 weeks ago
- Constructing a pangenome gene graph☆204Aug 11, 2025Updated 6 months ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆274Oct 13, 2022Updated 3 years ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆742Mar 18, 2025Updated 10 months ago
- haplotypic duplication identification tool☆275Oct 30, 2025Updated 3 months ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆207Nov 18, 2022Updated 3 years ago
- A fast K-mer counter for high-fidelity shotgun datasets☆140Jan 19, 2026Updated 3 weeks ago
- assembly evaluation tool☆35May 11, 2022Updated 3 years ago
- ☆78Jun 12, 2020Updated 5 years ago
- k-mer based assembly evaluation☆338Jun 28, 2024Updated last year
- A gap-closing software tool that uses long reads to enhance genome assembly.☆231Sep 6, 2024Updated last year
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆157Feb 1, 2026Updated 2 weeks ago
- Synteny and Rearrangement Identifier☆447Apr 29, 2025Updated 9 months ago
- ☆89Dec 3, 2025Updated 2 months ago
- Sequence-to-graph mapper and graph generator☆470Aug 11, 2025Updated 6 months ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 2 years ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Apr 8, 2021Updated 4 years ago
- SRF: Satellite Repeat Finder☆101Jan 8, 2024Updated 2 years ago
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆35Dec 24, 2025Updated last month
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- ☆39Feb 22, 2023Updated 2 years ago
- Assembled Genomes Compressor☆178Nov 25, 2024Updated last year