AntonBankevich / LJA
☆113Updated last month
Alternatives and similar repositories for LJA:
Users that are interested in LJA are comparing it to the libraries listed below
- ☆77Updated last month
- TSEBRA: Transcript Selector for BRAKER☆47Updated 4 months ago
- Pipeline to convert a haploid assembly into diploid☆100Updated 2 months ago
- A tool for Racon polishing of miniasm assemblies☆74Updated 4 years ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆100Updated 2 weeks ago
- Show pangenome graphs in an easy way☆55Updated 2 years ago
- A organelle de novo genome assembly toolkit☆58Updated last month
- Detecting multi-genome synteny using minimizer graph mapping☆76Updated 2 months ago
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆79Updated 4 months ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆58Updated 2 months ago
- A list of software for pangenomics☆107Updated 3 weeks ago
- Large genome reassembly based on Hi-C data, continuation of GRAAL☆40Updated last year
- Mumemto: multi-MUM and MEM finding across pangenomes☆78Updated this week
- Evaluate variant calls and its combination with k-mer multiplicity☆66Updated 2 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆71Updated 3 years ago
- Banded Striped DNA Sequence Alignment☆45Updated last year
- ☆43Updated 8 years ago
- A program for assessing the T2T genome continuity☆69Updated 3 weeks ago
- A program to call variants from genome alignment☆79Updated last year
- Splitting of sequence reads by internal adapter sequence search☆51Updated last year
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆54Updated 2 years ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆123Updated this week
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆47Updated last year
- ☆61Updated 2 weeks ago
- Identification of transposable element families from pangenome polymorphisms☆45Updated 3 weeks ago
- Simple pileup-based variant caller☆87Updated last month
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆88Updated 3 years ago
- ☆71Updated 3 weeks ago
- Interactive quality assessment of genome assemblies☆98Updated this week
- ☆76Updated 4 years ago