AntonBankevich / LJALinks
☆118Updated 2 months ago
Alternatives and similar repositories for LJA
Users that are interested in LJA are comparing it to the libraries listed below
Sorting:
- Pipeline to convert a haploid assembly into diploid☆108Updated 10 months ago
- Detecting multi-genome synteny using minimizer graph mapping☆91Updated 2 weeks ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆115Updated 3 weeks ago
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆106Updated last week
- TSEBRA: Transcript Selector for BRAKER☆49Updated 3 weeks ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆106Updated 3 months ago
- A organelle de novo genome assembly toolkit☆70Updated 9 months ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆124Updated 3 weeks ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆74Updated last week
- Structural Variant Identification Method using Genome Assemblies☆128Updated 3 years ago
- A program for assessing the T2T genome continuity☆90Updated 2 months ago
- Call select base modifications in PacBio HiFi reads☆15Updated last month
- use long sequenced reads to close gaps in assemblies☆39Updated 7 years ago
- TGS scaffolding☆47Updated 4 years ago
- ☆84Updated last week
- ☆45Updated 9 years ago
- A list of software for pangenomics☆162Updated last week
- ☆68Updated last month
- Identification of transposable element families from pangenome polymorphisms☆53Updated 6 months ago
- A tool for Racon polishing of miniasm assemblies☆78Updated 3 months ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆97Updated last year
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆54Updated 4 months ago
- Interactive quality assessment of genome assemblies☆116Updated this week
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆40Updated 5 years ago
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆86Updated last year
- Mapping pipeline for data generated using Arima-HiC☆81Updated last year
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆76Updated 4 years ago
- A tool for evaluate long-read de novo assembly results☆48Updated last year
- k-mer learning materials☆80Updated 9 months ago