AntonBankevich / LJALinks
☆117Updated this week
Alternatives and similar repositories for LJA
Users that are interested in LJA are comparing it to the libraries listed below
Sorting:
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆111Updated last month
- Pipeline to convert a haploid assembly into diploid☆103Updated 7 months ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆111Updated 2 months ago
- Detecting multi-genome synteny using minimizer graph mapping☆82Updated last month
- A organelle de novo genome assembly toolkit☆69Updated 6 months ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- ☆66Updated 2 weeks ago
- Structural Variant Identification Method using Genome Assemblies☆123Updated 3 years ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆104Updated 2 weeks ago
- TSEBRA: Transcript Selector for BRAKER☆48Updated 10 months ago
- A program for assessing the T2T genome continuity☆84Updated this week
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆69Updated last week
- A program to call variants from genome alignment☆81Updated 4 months ago
- A list of software for pangenomics☆128Updated 2 weeks ago
- ☆44Updated 8 years ago
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆76Updated 2 weeks ago
- Show pangenome graphs in an easy way☆56Updated last month
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆40Updated 5 years ago
- De novo assembly from Oxford Nanopore reads.☆86Updated 3 months ago
- A tool for Racon polishing of miniasm assemblies☆77Updated 2 weeks ago
- SRF: Satellite Repeat Finder☆97Updated last year
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆113Updated 3 months ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆52Updated 9 months ago
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆85Updated 9 months ago
- ☆138Updated 4 months ago
- use long sequenced reads to close gaps in assemblies☆39Updated 7 years ago
- MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation☆72Updated 2 weeks ago
- Call select base modifications in PacBio HiFi reads☆14Updated 7 months ago
- TGS scaffolding☆46Updated 3 years ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆92Updated last year