AntonBankevich / LJA
☆108Updated last month
Related projects: ⓘ
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆80Updated 3 weeks ago
- TSEBRA: Transcript Selector for BRAKER☆46Updated 3 months ago
- Pipeline to convert a haploid assembly into diploid☆89Updated 3 months ago
- Show pangenome graphs in an easy way☆52Updated 2 years ago
- A tool for Racon polishing of miniasm assemblies☆72Updated 3 years ago
- Splitting of sequence reads by internal adapter sequence search☆48Updated last year
- Pangenome-based genome inference☆103Updated last week
- TGS scaffolding☆45Updated 2 years ago
- Banded Striped DNA Sequence Alignment☆46Updated last year
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆41Updated 7 months ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆112Updated last month
- PBSIM3: a simulator for all types of PacBio and ONT long reads☆55Updated 6 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆106Updated 7 months ago
- ☆41Updated 7 years ago
- Sorts amplicons from Nanopore sequencing data based on similarity☆31Updated 3 weeks ago
- Identification of transposable element families from pangenome polymorphisms☆38Updated last month
- A list of software for pangenomics☆73Updated 2 weeks ago
- ☆99Updated 2 weeks ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆93Updated 3 years ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆54Updated 8 months ago
- Detecting multi-genome synteny using minimizer graph mapping☆65Updated this week
- Predict 5mC in PacBio HiFi reads☆30Updated 11 months ago
- Large genome reassembly based on Hi-C data, continuation of GRAAL☆38Updated 5 months ago
- Interactive quality assessment of genome assemblies☆84Updated last month
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆57Updated 5 years ago
- ☆77Updated 4 years ago
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆37Updated 4 years ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆100Updated this week
- ☆56Updated 2 months ago