TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.
☆211Nov 23, 2025Updated 8 months ago
Alternatives and similar repositories for TOGA
Users that are interested in TOGA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Portable solution to generate genome alignment chains using lastz☆69Updated this week
- A genome completeness evaluation tool based on miniprot☆259Jul 29, 2026Updated 2 weeks ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆149Apr 13, 2026Updated 3 months ago
- Identify and find telomeres, or telomeric repeats in a genome.☆173Nov 24, 2025Updated 8 months ago
- This is the standalone version of the EviAnn pipeline☆179Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆198Aug 3, 2026Updated last week
- Synteny and Rearrangement Identifier☆482Jul 1, 2026Updated last month
- Official home of genome aligner based upon notion of Cactus graphs☆700Updated this week
- An accurate GFF3/GTF lift over pipeline☆547Aug 1, 2023Updated 3 years ago
- FastOMA is a scalable software package to infer orthology relationship.☆102Jul 26, 2026Updated 2 weeks ago
- Tool to plot synteny and structural rearrangements between genomes☆351Jul 27, 2026Updated 2 weeks ago
- ☆255Jan 24, 2025Updated last year
- ☆93Jul 31, 2026Updated last week
- Earl Grey: A fully automated TE curation and annotation pipeline☆221Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Using Deep Learning to predict gene annotations☆303Jul 22, 2026Updated 3 weeks ago
- Detecting multi-genome synteny using minimizer graph mapping☆114Jun 12, 2026Updated last month
- Align proteins to genomes with splicing and frameshift☆414Jan 5, 2026Updated 7 months ago
- source code for EVM☆126Nov 29, 2024Updated last year
- Tiberius is a deep learning gene finder.☆130Updated this week
- k-mer based assembly evaluation☆351Jul 6, 2026Updated last month
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆465Jun 17, 2026Updated last month
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆125Updated this week
- Any Way to Show Multi genomic Synteny☆231Jul 4, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Repeat-aware polishing genomes assembled using HiFi long reads☆105Apr 7, 2026Updated 4 months ago
- SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …☆94Jul 30, 2026Updated last week
- Find, circularise and annotate mitogenome from PacBio assemblies☆199May 11, 2025Updated last year
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 3 years ago
- Long read QC, assembly and scaffolding pipeline☆13Jul 13, 2020Updated 6 years ago
- oxford dot plots☆173Jul 2, 2026Updated last month
- ☆123Jul 17, 2026Updated 3 weeks ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆114Jul 23, 2024Updated 2 years ago
- Make colorful identity heatmaps of genomic sequence☆139May 24, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆190May 22, 2025Updated last year
- Tools for fast and flexible genome assembly scaffolding and improvement☆575Feb 14, 2024Updated 2 years ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆207Apr 27, 2026Updated 3 months ago
- a tool for inferring species tree from sequencing reads☆161May 19, 2026Updated 2 months ago
- SRF: Satellite Repeat Finder☆107Jan 8, 2024Updated 2 years ago
- Genome alignment and synteny plots☆36Mar 24, 2026Updated 4 months ago
- Constructing a pangenome gene graph☆210Aug 11, 2025Updated last year