hillerlab / TOGALinks
TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.
☆200Updated 3 weeks ago
Alternatives and similar repositories for TOGA
Users that are interested in TOGA are comparing it to the libraries listed below
Sorting:
- ☆226Updated 10 months ago
- Any Way to Show Multi genomic Synteny☆213Updated 5 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆210Updated last year
- Version 5 of the CAFE phylogenetics software☆155Updated 10 months ago
- An ultra-fast and efficient genomic tool for coverage calculation☆166Updated 8 months ago
- Constructing a pangenome gene graph☆200Updated 4 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆177Updated 2 years ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆133Updated last year
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆169Updated 5 months ago
- ☆222Updated last week
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆143Updated 4 months ago
- A bioinformatics tool for working with modified bases☆233Updated 2 weeks ago
- A pipeline used to identify different modes of duplicated gene pairs☆116Updated 4 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆189Updated 7 months ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆112Updated 3 months ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆200Updated 3 months ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆177Updated last year
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆215Updated 5 months ago
- Earl Grey: A fully automated TE curation and annotation pipeline☆188Updated 2 weeks ago
- Reference-free profiling of polyploid genomes☆136Updated 2 months ago
- Tools for plotting methylation data in various ways☆166Updated 3 weeks ago
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆182Updated 2 months ago
- Pangenome-based genome inference☆152Updated 2 weeks ago
- A library for running k-mers based GWAS☆122Updated last year
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆118Updated 4 years ago
- Get assembly statistics from FASTA and FASTQ files☆124Updated 2 years ago
- SMC++ infers population history from whole-genome sequence data.☆168Updated last year
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆188Updated last year
- accurate LiftOver tool for new genome assemblies☆139Updated last year
- Nanopore data assembler☆162Updated 3 years ago