hillerlab / TOGALinks
TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.
☆189Updated last month
Alternatives and similar repositories for TOGA
Users that are interested in TOGA are comparing it to the libraries listed below
Sorting:
- ☆213Updated 6 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆207Updated last year
- Version 5 of the CAFE phylogenetics software☆136Updated 5 months ago
- Any Way to Show Multi genomic Synteny☆201Updated last month
- An ultra-fast and efficient genomic tool for coverage calculation☆156Updated 4 months ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆108Updated last year
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆147Updated 3 weeks ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆177Updated 9 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆185Updated 2 months ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆126Updated 9 months ago
- Reference-free profiling of polyploid genomes☆120Updated last month
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆141Updated 2 weeks ago
- Constructing a pangenome gene graph☆193Updated 2 months ago
- Earl Grey: A fully automated TE curation and annotation pipeline☆177Updated 2 weeks ago
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆116Updated 4 years ago
- A pipeline used to identify different modes of duplicated gene pairs☆105Updated 2 weeks ago
- ☆205Updated this week
- Dfam Transposable Element Tools Docker container.☆99Updated last month
- A library for running k-mers based GWAS☆112Updated 9 months ago
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆175Updated 3 months ago
- ☆27Updated 4 months ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆167Updated last month
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆115Updated last year
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆172Updated last year
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆141Updated 7 months ago
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆118Updated 4 years ago
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆103Updated last month
- ☆81Updated last year
- accurate LiftOver tool for new genome assemblies☆132Updated last year
- Fast and accurately polish the genome generated by long reads.☆229Updated 7 months ago