Alternatives and similar repositories for egapx:

Users that are interested in egapx are comparing it to the libraries listed below

• hewm2008 / NGenomeSyn
  Any Way to Show Multi genomic Synteny
  ☆166Updated 2 months ago
• DessimozLab / read2tree
  a tool for inferring species tree from sequencing reads
  ☆146Updated last month
• zhaotao1987 / SynNet-Pipeline
  Workflow for Building Microsynteny Networks
  ☆48Updated 2 years ago
• timkahlke / LongRead_tutorials
  Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
  ☆130Updated 3 years ago
• chenlianfu / geta
  ☆73Updated 6 months ago
• wdecoster / chopper
  ☆160Updated 4 months ago
• OpenGene / fastplong
  Ultra-fast preprocessing and quality control for long-read sequencing data
  ☆93Updated 3 weeks ago
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆178Updated 6 months ago
• moiexpositoalonsolab / grenepipe
  A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles.
  ☆95Updated last month
• bhattlab / MGEfinder
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
  ☆114Updated last year
• PacificBiosciences / pb-assembly
  PacBio Assembly Tool Suite: Reads in ⇨ Assembly out
  ☆114Updated 4 years ago
• jtlovell / GENESPACE
  ☆196Updated 5 months ago
• steuernb / NLR-Annotator
  NLR-Annotator upload
  ☆62Updated last year
• nadegeguiglielmoni / genome_assembly_tools
  List of genome assembly tools
  ☆54Updated 2 weeks ago
• Nextomics / NextPolish
  Fast and accurately polish the genome generated by long reads.
  ☆215Updated last week
• hahnlab / CAFE5
  Version 5 of the CAFE phylogenetics software
  ☆121Updated 2 months ago
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆118Updated 5 months ago
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆78Updated 3 years ago
• HuiyangYu / PanDepth
  An ultra-fast and efficient genomic tool for coverage calculation
  ☆138Updated 4 months ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆113Updated last month
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆87Updated last month
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆194Updated last year
• CompSynBioLab-KoreaUniv / FunGAP
  FunGAP: fungal Genome Annotation Pipeline
  ☆109Updated last year
• zhangrengang / TEsorter
  TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes
  ☆90Updated 3 weeks ago
• DerKevinRiehl / TransposonUltimate
  TransposonUltimate - a holistic set of tools for transposon identification
  ☆82Updated 2 years ago
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆81Updated 2 years ago
• NAL-i5K / GFF3toolkit
  Python programs for processing GFF3 files
  ☆96Updated 9 months ago
• harvardinformatics / GenomeAnnotation
  Best practices and workflow for genome annotation
  ☆73Updated last week
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆104Updated 7 months ago
• nigyta / dfast_core
  DDBJ Fast Annotation and Submission Tool
  ☆78Updated 3 weeks ago