ncbi / egapxLinks
Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation
☆181Updated last month
Alternatives and similar repositories for egapx
Users that are interested in egapx are comparing it to the libraries listed below
Sorting:
- Any Way to Show Multi genomic Synteny☆217Updated 7 months ago
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆159Updated 3 months ago
- ☆231Updated last week
- Version 5 of the CAFE phylogenetics software☆159Updated last year
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆178Updated 2 years ago
- Earl Grey: A fully automated TE curation and annotation pipeline☆192Updated 3 weeks ago
- An ultra-fast and efficient genomic tool for coverage calculation☆169Updated 10 months ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆218Updated 5 months ago
- This is the standalone version of the EviAnn pipeline☆136Updated last week
- Constructing a pangenome gene graph☆204Updated 6 months ago
- A pipeline used to identify different modes of duplicated gene pairs☆117Updated 6 months ago
- ☆232Updated last year
- List of genome assembly tools☆93Updated last week
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆203Updated 2 months ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆142Updated 6 months ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆164Updated 3 months ago
- a tool for inferring species tree from sequencing reads☆156Updated 2 months ago
- High-precision TE Annotator☆150Updated 2 months ago
- Fast and accurately polish the genome generated by long reads.☆240Updated last year
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆215Updated 7 months ago
- source code for EVM☆122Updated last year
- Pangenome-based genome inference☆155Updated 2 months ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆148Updated last year
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆177Updated last year
- A list of software for pangenomics☆173Updated 2 weeks ago
- ☆86Updated last year
- A genome completeness evaluation tool based on miniprot☆233Updated 4 months ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆112Updated 5 months ago
- Using Deep Learning to predict gene annotations☆275Updated last week
- Find, circularise and annotate mitogenome from PacBio assemblies☆191Updated 9 months ago