Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation
☆203Apr 27, 2026Updated 2 months ago
Alternatives and similar repositories for egapx
Users that are interested in egapx are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This is the standalone version of the EviAnn pipeline☆175Jun 24, 2026Updated last month
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆150Apr 13, 2026Updated 3 months ago
- Using Deep Learning to predict gene annotations☆299Updated this week
- Identify and find telomeres, or telomeric repeats in a genome.☆171Nov 24, 2025Updated 8 months ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆24Jul 1, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆91Jun 26, 2026Updated last month
- A genome completeness evaluation tool based on miniprot☆254Updated this week
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆180Jun 23, 2026Updated last month
- Tiberius is a deep learning gene finder.☆128Updated this week
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆275Jul 7, 2026Updated 2 weeks ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆571Feb 14, 2024Updated 2 years ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆465Jun 17, 2026Updated last month
- Yet another Hi-C scaffolding tool☆181Nov 4, 2024Updated last year
- Whole Genome Annotation Pipeline☆16Jun 20, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆404Apr 22, 2026Updated 3 months ago
- Genome annotation pipeline☆66Jun 25, 2024Updated 2 years ago
- source code for EVM☆126Nov 29, 2024Updated last year
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆209Nov 23, 2025Updated 8 months ago
- Earl Grey: A fully automated TE curation and annotation pipeline☆221Updated this week
- Plant genome assembly and annotation pipeline using snakemake☆55May 14, 2025Updated last year
- Synteny and Rearrangement Identifier☆480Jul 1, 2026Updated 3 weeks ago
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆196Oct 15, 2025Updated 9 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆124Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- High-precision TE Annotator☆162Dec 4, 2025Updated 7 months ago
- ☆45Dec 11, 2025Updated 7 months ago
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 3 years ago
- Make colorful identity heatmaps of genomic sequence☆139May 24, 2024Updated 2 years ago
- An ultra-fast and efficient genomic tool for coverage calculation☆173Jun 9, 2026Updated last month
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆790May 31, 2026Updated last month
- A novel genome assembly pipeline based on deep learning☆71Dec 2, 2024Updated last year
- TD2☆41May 17, 2026Updated 2 months ago
- An accurate GFF3/GTF lift over pipeline☆547Aug 1, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Detecting multi-genome synteny using minimizer graph mapping☆109Jun 12, 2026Updated last month
- Extensive de-novo TE Annotator☆464Jul 16, 2026Updated last week
- ☆33Jul 9, 2024Updated 2 years ago
- Neural network classification of TE☆100Apr 3, 2026Updated 3 months ago
- Official home of genome aligner based upon notion of Cactus graphs☆697Updated this week
- the pangenome graph builder☆508Updated this week
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆94Dec 3, 2025Updated 7 months ago