ncbi / egapxLinks
Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation
☆162Updated 2 months ago
Alternatives and similar repositories for egapx
Users that are interested in egapx are comparing it to the libraries listed below
Sorting:
- Any Way to Show Multi genomic Synteny☆204Updated 3 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆172Updated last year
- Earl Grey: A fully automated TE curation and annotation pipeline☆181Updated 3 weeks ago
- An ultra-fast and efficient genomic tool for coverage calculation☆159Updated 6 months ago
- This is the standalone version of the EviAnn pipeline☆124Updated 2 weeks ago
- Version 5 of the CAFE phylogenetics software☆149Updated 8 months ago
- ☆212Updated 2 weeks ago
- Constructing a pangenome gene graph☆195Updated 2 months ago
- ☆218Updated 8 months ago
- A pipeline used to identify different modes of duplicated gene pairs☆108Updated 2 months ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆185Updated last month
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆145Updated 9 months ago
- Fast and accurately polish the genome generated by long reads.☆234Updated 9 months ago
- List of genome assembly tools☆79Updated last week
- a tool for inferring species tree from sequencing reads☆152Updated last week
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆195Updated 3 months ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆147Updated 8 months ago
- Using Deep Learning to predict gene annotations☆224Updated last month
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆111Updated last month
- PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. Please report only **techni…☆171Updated 2 weeks ago
- ☆82Updated last year
- source code for EVM☆118Updated 10 months ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆142Updated 2 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆209Updated last year
- A genome completeness evaluation tool based on miniprot☆222Updated 3 weeks ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆151Updated 2 months ago
- Dfam Transposable Element Tools Docker container.☆100Updated 3 weeks ago
- oxford dot plots☆158Updated this week
- Find, circularise and annotate mitogenome from PacBio assemblies☆188Updated 5 months ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆100Updated 8 months ago