☆94Jul 31, 2026Updated last month
Alternatives and similar repositories for OMArk
Users that are interested in OMArk are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- FastOMA is a scalable software package to infer orthology relationship.☆102Updated this week
- This is the standalone version of the EviAnn pipeline☆186Sep 10, 2026Updated last week
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis☆15Aug 27, 2023Updated 3 years ago
- A organelle de novo genome assembly toolkit☆82Feb 22, 2025Updated last year
- OMAmer - tree-driven and alignment-free protein assignment to sub-families☆23Aug 9, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Tiberius is a deep learning gene finder.☆139Sep 11, 2026Updated last week
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆207Sep 4, 2026Updated 2 weeks ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆66May 17, 2026Updated 4 months ago
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Feb 26, 2026Updated 6 months ago
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆211Nov 23, 2025Updated 9 months ago
- k-mer based assembly evaluation☆355Jul 6, 2026Updated 2 months ago
- Using Deep Learning to predict gene annotations☆305Jul 22, 2026Updated last month
- A genome completeness evaluation tool based on miniprot☆267Aug 17, 2026Updated last month
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆149Apr 13, 2026Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- haplotypic duplication identification tool☆295Oct 30, 2025Updated 10 months ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated last year
- Repeat-aware polishing genomes assembled using HiFi long reads☆105Apr 7, 2026Updated 5 months ago
- Robust identification of orthologous Synteny with the Orthology Index☆43Aug 22, 2026Updated 3 weeks ago
- ☆124Sep 11, 2026Updated last week
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆37Apr 20, 2026Updated 5 months ago
- A program for assessing the T2T genome continuity and completeness☆97Sep 8, 2026Updated last week
- TD2☆42May 17, 2026Updated 4 months ago
- ☆41Feb 22, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆96Dec 3, 2025Updated 9 months ago
- Identify and find telomeres, or telomeric repeats in a genome.☆176Nov 24, 2025Updated 9 months ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆419Aug 25, 2026Updated 3 weeks ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆184Jun 23, 2026Updated 2 months ago
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆76Jun 4, 2026Updated 3 months ago
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆203Aug 17, 2026Updated last month
- genome annotation (RNAseq and TE) pipeline (draft)☆13Updated this week
- ☆33Mar 3, 2026Updated 6 months ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆467Jun 17, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A tool for evaluating long-read de novo assembly results☆55Aug 25, 2024Updated 2 years ago
- ☆45Dec 11, 2025Updated 9 months ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆249Sep 6, 2024Updated 2 years ago
- Genome annotation with AUGUSTUS☆341May 30, 2026Updated 3 months ago
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆115Jul 11, 2026Updated 2 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆576Feb 14, 2024Updated 2 years ago
- BUSCO_Phylogenomics | Pipeline to construct species phylogenies using BUSCO proteins☆112Jun 30, 2026Updated 2 months ago