☆94Oct 23, 2026Updated last week
Alternatives and similar repositories for OMArk
Users that are interested in OMArk are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- FastOMA is a scalable software package to infer orthology relationship.☆104Updated this week
- OMAmer - tree-driven and alignment-free protein assignment to sub-families☆23Aug 9, 2026Updated 2 months ago
- This is the standalone version of the EviAnn pipeline☆187Oct 7, 2026Updated 3 weeks ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆150Apr 13, 2026Updated 6 months ago
- ☆12Jan 8, 2026Updated 9 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- haplotypic duplication identification tool☆298Oct 30, 2025Updated last year
- k-mer based assembly evaluation☆357Jul 6, 2026Updated 3 months ago
- Tiberius is a deep learning gene finder.☆145Updated this week
- Paludamentum is the coat of the emperor - evidence processing pipeline☆11Updated this week
- Repeat-aware polishing genomes assembled using HiFi long reads☆105Apr 7, 2026Updated 6 months ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆67May 17, 2026Updated 5 months ago
- Using Deep Learning to predict gene annotations☆313Oct 23, 2026Updated last week
- Yet another Hi-C scaffolding tool☆185Nov 4, 2024Updated last year
- Find, circularise and annotate mitogenome from PacBio assemblies☆204May 11, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆214Sep 28, 2026Updated last month
- A genome completeness evaluation tool based on miniprot☆270Oct 7, 2026Updated 3 weeks ago
- A organelle de novo genome assembly toolkit☆89Feb 22, 2025Updated last year
- A program for assessing the T2T genome continuity and completeness☆98Oct 13, 2026Updated 2 weeks ago
- Interactive quality assessment of genome assemblies☆130Aug 5, 2026Updated 2 months ago
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆212Nov 23, 2025Updated 11 months ago
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆77Jun 4, 2026Updated 4 months ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated last year
- Unsupervised Deep Gene Finding☆40Oct 21, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆469Jun 17, 2026Updated 4 months ago
- ☆124Sep 29, 2026Updated last month
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis☆15Aug 27, 2023Updated 3 years ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆578Oct 1, 2026Updated 3 weeks ago
- ☆33Jul 9, 2024Updated 2 years ago
- Foreign Contamination Screening caller scripts and documentation☆180Mar 18, 2025Updated last year
- A Snakemake workflow for recovery of plastid genomes from metagenomic samples☆11Nov 16, 2024Updated last year
- ☆41Feb 22, 2023Updated 3 years ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆422Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Identify and find telomeres, or telomeric repeats in a genome.☆180Oct 23, 2026Updated last week
- An accurate GFF3/GTF lift over pipeline☆562Aug 1, 2023Updated 3 years ago
- Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)☆262Jun 25, 2026Updated 4 months ago
- ☆30Jul 16, 2022Updated 4 years ago
- Reference-free profiling of polyploid genomes☆149Oct 2, 2025Updated last year
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆28Updated this week
- Consensus genome annotation using OMA☆32Jan 14, 2026Updated 9 months ago