lh3 / miniprotLinks
Align proteins to genomes with splicing and frameshift
☆378Updated last month
Alternatives and similar repositories for miniprot
Users that are interested in miniprot are comparing it to the libraries listed below
Sorting:
- Eukaryotic Genome Annotation Pipeline☆359Updated last month
- Tool to plot synteny and structural rearrangements between genomes☆318Updated 4 months ago
- Synteny and Rearrangement Identifier☆403Updated 3 months ago
- SortMeRNA: next-generation sequence filtering and alignment tool☆271Updated 3 weeks ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆419Updated 6 months ago
- the pangenome graph builder☆444Updated last week
- A genome visualization python package for comparative genomics☆349Updated 2 months ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆266Updated last month
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆271Updated 6 months ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆354Updated last month
- ☆259Updated this week
- Using Deep Learning to predict gene annotations☆209Updated 2 months ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆239Updated 4 years ago
- Genome browser and variant annotation☆368Updated this week
- An overview of all nanopack tools☆265Updated 2 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆329Updated last year
- quality filtering tool for long reads☆358Updated last year
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆292Updated last week
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆426Updated 7 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆520Updated last year
- Fast and accurately polish the genome generated by long reads.☆229Updated 7 months ago
- An accurate GFF3/GTF lift over pipeline☆493Updated 2 years ago
- ☆205Updated last week
- Genome Assembly and Annotation Service code☆214Updated last year
- IQ-TREE software version 2: phylogenetics by maximum likelihood☆297Updated 3 months ago
- Finds SNP sites from a multi-FASTA alignment file☆264Updated 4 years ago
- adapter trimmer for Oxford Nanopore reads☆368Updated last year
- Genome annotation with AUGUSTUS☆314Updated this week
- Mummer alignment tool☆521Updated 6 months ago
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆223Updated last month