Align proteins to genomes with splicing and frameshift
☆404Jan 5, 2026Updated 5 months ago
Alternatives and similar repositories for miniprot
Users that are interested in miniprot are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A genome completeness evaluation tool based on miniprot☆245Sep 18, 2025Updated 8 months ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆149Apr 13, 2026Updated 2 months ago
- An accurate GFF3/GTF lift over pipeline☆542Aug 1, 2023Updated 2 years ago
- Constructing a pangenome gene graph☆207Aug 11, 2025Updated 10 months ago
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆113Feb 28, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- base-accurate DNA sequence alignments using WFA and mashmap3☆217Mar 20, 2026Updated 2 months ago
- Synteny and Rearrangement Identifier☆471May 20, 2026Updated 3 weeks ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆397Apr 22, 2026Updated last month
- Yet another k-mer analyzer☆172Dec 30, 2025Updated 5 months ago
- haplotypic duplication identification tool☆288Oct 30, 2025Updated 7 months ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆783May 31, 2026Updated 2 weeks ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆566Feb 14, 2024Updated 2 years ago
- Using Deep Learning to predict gene annotations☆292May 21, 2026Updated 3 weeks ago
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆207Nov 23, 2025Updated 6 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Find, circularise and annotate mitogenome from PacBio assemblies☆197May 11, 2025Updated last year
- Yet another Hi-C scaffolding tool☆181Nov 4, 2024Updated last year
- Sequence-to-graph mapper and graph generator☆481Aug 11, 2025Updated 10 months ago
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆296May 28, 2026Updated 2 weeks ago
- the pangenome graph builder☆501Mar 31, 2026Updated 2 months ago
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆207Aug 25, 2025Updated 9 months ago
- k-mer based assembly evaluation☆343May 21, 2026Updated 3 weeks ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆463Apr 12, 2026Updated 2 months ago
- Tool to plot synteny and structural rearrangements between genomes☆348Apr 7, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆249Dec 16, 2025Updated 5 months ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆211Nov 18, 2022Updated 3 years ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Apr 8, 2021Updated 5 years ago
- Pairwise whole genome aligner☆237May 19, 2026Updated 3 weeks ago
- Whole Genome Alignment Tools☆225Nov 6, 2025Updated 7 months ago
- SRF: Satellite Repeat Finder☆104Jan 8, 2024Updated 2 years ago
- Identify and find telomeres, or telomeric repeats in a genome.☆165Nov 24, 2025Updated 6 months ago
- Official home of genome aligner based upon notion of Cactus graphs☆685May 26, 2026Updated 2 weeks ago
- Fast genome analysis from unassembled short reads☆323Apr 8, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Evaluation and polishing workflows for T2T genome assemblies☆154Jun 2, 2026Updated last week
- High-precision TE Annotator☆160Dec 4, 2025Updated 6 months ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆88Mar 12, 2026Updated 3 months ago
- A genomic k-mer counter (and sequence utility) with nice features.☆168Jun 3, 2026Updated last week
- A grammar of graphics for comparative genomics☆764Feb 23, 2026Updated 3 months ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,197May 19, 2026Updated 3 weeks ago
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆572May 18, 2026Updated 3 weeks ago