i10labtitech / GINGERLinks
☆28Updated last year
Alternatives and similar repositories for GINGER
Users that are interested in GINGER are comparing it to the libraries listed below
Sorting:
- A genome assembly assessment pipeline.☆37Updated last year
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- This is a method to find telomeres and centromeres in plants.☆41Updated 2 years ago
- Multi-genome synteny block visualization tool☆42Updated 5 months ago
- Genome Annotation Pipeline☆36Updated 10 months ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆36Updated 5 months ago
- A tool for evaluating long-read de novo assembly results☆36Updated 10 months ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆37Updated this week
- ☆37Updated last year
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- Nextflow pipeline for scaffolding genome assemblies with Hi-C reads☆14Updated 6 months ago
- ☆41Updated 2 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆26Updated 3 months ago
- ☆40Updated 2 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆27Updated 3 years ago
- ☆34Updated 10 months ago
- Chromosome-level synteny plotting using orthologous regions☆29Updated 9 months ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 8 months ago
- ☆30Updated 3 months ago
- ☆30Updated 6 months ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆31Updated 6 months ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆39Updated 3 months ago
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- Plant genome assembly and annotation pipeline using snakemake☆44Updated 2 months ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- A tool for quick and accurate calculation of syntenic diversity.☆39Updated 5 months ago
- ☆21Updated 11 months ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆33Updated 9 months ago
- ☆10Updated last month