☆29Feb 5, 2026Updated 3 weeks ago
Alternatives and similar repositories for GINGER
Users that are interested in GINGER are comparing it to the libraries listed below
Sorting:
- A program for assessing the T2T genome continuity☆92Dec 14, 2025Updated 2 months ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Apr 28, 2020Updated 5 years ago
- Repeat-aware polishing genomes assembled using HiFi long reads☆98Nov 12, 2025Updated 3 months ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆167Oct 29, 2025Updated 4 months ago
- A tool for quick and accurate calculation of syntenic diversity.☆42Sep 22, 2025Updated 5 months ago
- Reduce genome assembly redundancy using shared mapped k-mer method.☆15Apr 28, 2025Updated 10 months ago
- The tools are used for displaying hic signal of genome☆24Jan 4, 2021Updated 5 years ago
- This is the standalone version of the EviAnn pipeline☆139Feb 5, 2026Updated 3 weeks ago
- ☆16Apr 3, 2023Updated 2 years ago
- Centromics: visualing centromeres with multiple omics data☆25Mar 4, 2025Updated 11 months ago
- The complete sequence of a Chinese individual☆11Oct 8, 2024Updated last year
- Portable solution to generate genome alignment chains using lastz☆60Dec 20, 2025Updated 2 months ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆54Dec 11, 2025Updated 2 months ago
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆254Jan 5, 2026Updated last month
- ☆33Mar 19, 2025Updated 11 months ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆30Nov 9, 2025Updated 3 months ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Dec 7, 2022Updated 3 years ago
- ☆41May 19, 2025Updated 9 months ago
- source code for EVM☆122Nov 29, 2024Updated last year
- HELIANO is a software for detection and classification of Helitron-like elements.☆33Jun 10, 2025Updated 8 months ago
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 2 years ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Apr 22, 2024Updated last year
- The complete reference genome for grapevine (Vitis vinifera L.) genetics and breeding☆14Feb 11, 2025Updated last year
- A tool for evaluating long-read de novo assembly results☆52Aug 25, 2024Updated last year
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆103Jul 23, 2024Updated last year
- Annotate Olfactory receptor CDS from genome☆10Apr 29, 2023Updated 2 years ago
- assembly evaluation tool☆35May 11, 2022Updated 3 years ago
- FastOMA is a scalable software package to infer orthology relationship.☆90Updated this week
- De novo annotation of young retrotransposons☆47Apr 12, 2022Updated 3 years ago
- ☆21Jan 13, 2026Updated last month
- A novel genome assembly pipeline based on deep learning☆69Dec 2, 2024Updated last year
- ☆16Jul 25, 2021Updated 4 years ago
- Merge transcriptome read-to-genome alignments into non-redundant transcript models☆20Jan 21, 2026Updated last month
- Nextflow pipeline for scaffolding genome assemblies with Hi-C reads☆16Nov 5, 2025Updated 3 months ago
- ☆45Dec 11, 2025Updated 2 months ago
- Genome alignment and synteny plots☆33Jun 5, 2023Updated 2 years ago
- GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology☆27Apr 11, 2025Updated 10 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆122Feb 24, 2026Updated last week
- ☆44Jul 23, 2025Updated 7 months ago