☆33Oct 21, 2026Updated last week
Alternatives and similar repositories for GINGER
Users that are interested in GINGER are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A pipeline for extracting Presence-Absence Variations (PAVs) in eukaryotic and prokaryotic genomes across multiple assemblies.☆11May 21, 2026Updated 5 months ago
- A program for assessing the T2T genome continuity and completeness☆98Oct 13, 2026Updated 2 weeks ago
- Repeat-aware polishing genomes assembled using HiFi long reads☆106Apr 7, 2026Updated 6 months ago
- The tools are used for displaying hic signal of genome☆25Jan 4, 2021Updated 5 years ago
- HiCAT new project☆40May 18, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆29May 12, 2026Updated 5 months ago
- A filter algorithm with program to filter an alignment or mapping file☆13May 15, 2025Updated last year
- Deep Learning Framework for Transposable Element Discovery and Annotation☆12Aug 18, 2026Updated 2 months ago
- A novel genome assembly pipeline based on deep learning☆71Dec 2, 2024Updated last year
- ☆16Oct 8, 2026Updated 3 weeks ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Apr 28, 2020Updated 6 years ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆191Jun 23, 2026Updated 4 months ago
- Robust Eukaryotic Annotation Toolkit☆18Feb 28, 2025Updated last year
- High throughput python tool for mining and analysis of gene duplications.☆16Jul 30, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆36Jun 24, 2026Updated 4 months ago
- Reduce genome assembly redundancy using shared mapped k-mer method.☆15Apr 28, 2025Updated last year
- ☆51Jul 23, 2025Updated last year
- ☆16Apr 3, 2023Updated 3 years ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆25Sep 25, 2026Updated last month
- Centromics: visualing centromeres with multiple omics data☆28Mar 4, 2025Updated last year
- ☆42May 19, 2025Updated last year
- ☆21Jul 12, 2026Updated 3 months ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆67May 17, 2026Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- This is the standalone version of the EviAnn pipeline☆187Oct 7, 2026Updated 3 weeks ago
- ☆23Jan 13, 2026Updated 9 months ago
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆288Aug 10, 2026Updated 2 months ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆35Jul 13, 2026Updated 3 months ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 3 years ago
- A shiny application to visualize MCscan result☆37Jun 26, 2026Updated 4 months ago
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- Genome annotation pre-publication results☆42Updated this week
- ☆45Dec 11, 2025Updated 10 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- The complete reference genome for grapevine (Vitis vinifera L.) genetics and breeding☆14Feb 11, 2025Updated last year
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Oct 17, 2026Updated 2 weeks ago
- Improved long-read assembly by preserving contained reads☆29Aug 22, 2024Updated 2 years ago
- Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…☆116Jan 30, 2026Updated 9 months ago
- source code for EVM☆130Sep 22, 2026Updated last month
- Telomere compliment tools☆28Nov 17, 2025Updated 11 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆132Updated this week