i10labtitech / GINGER
☆28Updated last year
Alternatives and similar repositories for GINGER
Users that are interested in GINGER are comparing it to the libraries listed below
Sorting:
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- Genome Annotation Pipeline☆35Updated 8 months ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆33Updated 3 months ago
- A genome assembly assessment pipeline.☆37Updated last year
- Robust identification of orthologous Synteny with the Orthology Index☆19Updated 2 weeks ago
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆27Updated 3 years ago
- ☆40Updated last year
- Plant genome assembly and annotation pipeline using snakemake☆44Updated last year
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆30Updated 3 months ago
- ☆10Updated 5 months ago
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- ☆29Updated 4 months ago
- Toolkit for evolutionary analyses of linkage groups☆31Updated 9 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 2 years ago
- ☆34Updated last year
- Multi-genome synteny block visualization tool☆37Updated 3 months ago
- ☆29Updated last month
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆36Updated last month
- ☆20Updated 9 months ago
- This is the standalone version of the EviAnn pipeline☆34Updated this week
- Chromosome-level synteny plotting using orthologous regions☆29Updated 7 months ago
- Computational Analysis of Gene Expression Evolution☆40Updated last month
- Nextflow pipeline for scaffolding genome assemblies with Hi-C reads☆14Updated 4 months ago
- ☆29Updated 8 months ago
- Centromics: visualing centromeres with multiple omics data☆18Updated last year
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Updated 5 months ago
- ☆40Updated 2 years ago
- ☆23Updated last year
- STAG: Species Tree from All Genes☆34Updated 6 years ago