i10labtitech / GINGER
☆24Updated 10 months ago
Related projects ⓘ
Alternatives and complementary repositories for GINGER
- ☆23Updated 2 months ago
- Genome Annotation Pipeline☆32Updated 3 months ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆34Updated last year
- ☆29Updated 2 weeks ago
- A genome assembly assessment pipeline.☆36Updated last year
- R package to draw syntenic plots in 3 different styles☆39Updated 11 months ago
- ☆28Updated 2 years ago
- ☆33Updated 8 months ago
- Domain based annotation of transposable elements☆19Updated last month
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆16Updated last year
- Centromics: visualing centromeres with multiple omics data☆22Updated 2 weeks ago
- ☆28Updated 2 months ago
- Mabs, a genome assembly tool which optimizes parameters of Hifiasm and Flye☆26Updated 6 months ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆25Updated last month
- Chromosome-level synteny plotting using orthologous regions☆28Updated 2 months ago
- ☆36Updated last year
- ☆20Updated 3 months ago
- Automatic evaluation of HGTs☆25Updated 2 months ago
- use long sequenced reads to close gaps in assemblies☆35Updated 6 years ago
- Centromics: visualing centromeres with multiple omics data☆17Updated 10 months ago
- ☆32Updated 3 years ago
- HiCAT new project☆27Updated last year
- A shiny application to visualize MCscan result☆33Updated 2 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆34Updated 2 months ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆28Updated last year
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 5 years ago
- Plant genome assembly and annotation pipeline using snakemake☆35Updated last year
- Nextflow pipeline for scaffolding genome assemblies with Hi-C reads☆13Updated last year
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆12Updated 4 years ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆19Updated 4 months ago