Gaius-Augustus / BRAKER
BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes
☆377Updated 3 weeks ago
Alternatives and similar repositories for BRAKER:
Users that are interested in BRAKER are comparing it to the libraries listed below
- Eukaryotic Genome Annotation Pipeline☆333Updated last month
- Pilon is an automated genome assembly improvement and variant detection tool☆347Updated 2 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆314Updated 8 months ago
- TransDecoder source☆285Updated 4 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆490Updated last year
- quality filtering tool for long reads☆319Updated last year
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆326Updated last year
- Scan contig files against PubMLST typing schemes☆212Updated 2 years ago
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆248Updated 2 months ago
- NCBI Prokaryotic Genome Annotation Pipeline☆327Updated 3 weeks ago
- Synteny and Rearrangement Identifier☆362Updated 2 months ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆261Updated 2 weeks ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆360Updated 5 months ago
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆305Updated last year
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆219Updated 4 years ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆242Updated 3 months ago
- the pangenome graph builder☆414Updated last week
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆302Updated 6 months ago
- Fast and accurate de novo assembler for long reads☆379Updated 9 months ago
- Genome Assembly and Annotation Service code☆207Updated last year
- Tool to plot synteny and structural rearrangements between genomes☆296Updated last week
- Rapid large-scale prokaryote pan genome analysis☆332Updated 2 years ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆481Updated this week
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆350Updated this week
- Rapid comparison and dereplication of genomes☆275Updated 2 months ago
- Sequence correction provided by ONT Research☆436Updated 4 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆274Updated 4 months ago
- Mass screening of contigs for antimicrobial and virulence genes☆389Updated last year
- Plotting scripts for long read sequencing data☆460Updated 2 weeks ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆413Updated last year