Gaius-Augustus / BRAKERLinks
BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes
☆419Updated 6 months ago
Alternatives and similar repositories for BRAKER
Users that are interested in BRAKER are comparing it to the libraries listed below
Sorting:
- Eukaryotic Genome Annotation Pipeline☆358Updated last month
- Tools for fast and flexible genome assembly scaffolding and improvement☆519Updated last year
- adapter trimmer for Oxford Nanopore reads☆367Updated last year
- Mummer alignment tool☆521Updated 6 months ago
- Sequence correction provided by ONT Research☆468Updated 2 months ago
- Fast and accurate de novo assembler for long reads☆390Updated last year
- Pilon is an automated genome assembly improvement and variant detection tool☆367Updated 3 years ago
- the pangenome graph builder☆444Updated this week
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆377Updated last month
- Synteny and Rearrangement Identifier☆403Updated 3 months ago
- quality filtering tool for long reads☆358Updated last year
- TransDecoder source☆296Updated 10 months ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆347Updated this week
- Genome assembly evaluation tool☆451Updated 8 months ago
- Extensive de-novo TE Annotator☆394Updated last month
- An accurate GFF3/GTF lift over pipeline☆493Updated 2 years ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆353Updated last month
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆236Updated 4 years ago
- Plotting scripts for long read sequencing data☆490Updated last week
- Genome annotation with AUGUSTUS☆313Updated last month
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆379Updated last week
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆663Updated 4 months ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆434Updated 2 years ago
- hybrid assembly pipeline for bacterial genomes☆603Updated last year
- Mass screening of contigs for antimicrobial and virulence genes☆432Updated last year
- NCBI Prokaryotic Genome Annotation Pipeline☆345Updated 2 weeks ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆267Updated last month
- Rapid large-scale prokaryote pan genome analysis☆354Updated 3 years ago
- Tool to plot synteny and structural rearrangements between genomes☆317Updated 4 months ago
- ☆259Updated this week