chenym1 / genetribeLinks
A tool for performing collinearity-incorporating homology inference
☆33Updated 2 years ago
Alternatives and similar repositories for genetribe
Users that are interested in genetribe are comparing it to the libraries listed below
Sorting:
- This is a method to find telomeres and centromeres in plants.☆42Updated 2 years ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆40Updated last week
- a Semi-automated pipeline for assembling T2T genome☆25Updated 3 months ago
- ☆41Updated 2 years ago
- ☆43Updated 5 months ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆45Updated last year
- Dynamic Elongation of a Genome Assembly Path☆25Updated last month
- Plant genome assembly and annotation pipeline using snakemake☆52Updated 8 months ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆34Updated 2 months ago
- scripts for the project of seven thaliana genomes assembly☆42Updated 4 years ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆29Updated 4 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆51Updated last month
- A pipeline for genomic variant detection with genome assemblies at population scale☆36Updated 7 months ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆43Updated this week
- Analyses of sex chromosome evolution in songbirds☆16Updated 6 years ago
- A tool for quick and accurate calculation of syntenic diversity.☆42Updated 3 months ago
- PanTE: A Comprehensive Framework for Transposable Element Discovery in Graph-based Pangenomes☆24Updated 3 months ago
- Genome Annotation Pipeline☆42Updated last year
- ☆24Updated 2 months ago
- ☆32Updated last year
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆36Updated last year
- ☆27Updated 2 years ago
- Centromics: visualing centromeres with multiple omics data☆25Updated 10 months ago
- ☆21Updated last year
- HELIANO is a software for detection and classification of Helitron-like elements.☆32Updated 7 months ago
- ☆29Updated 3 years ago
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆10Updated 10 months ago
- Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning☆28Updated last year
- ☆45Updated 3 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 3 years ago