chenym1 / genetribeLinks
A tool for performing collinearity-incorporating homology inference
☆33Updated 2 years ago
Alternatives and similar repositories for genetribe
Users that are interested in genetribe are comparing it to the libraries listed below
Sorting:
- ☆38Updated 2 months ago
- Plant genome assembly and annotation pipeline using snakemake☆47Updated 4 months ago
- BITACORA: A Bioinformatics tool for gene family annotation☆48Updated 4 months ago
- a Semi-automated pipeline for assembling T2T genome☆23Updated last month
- ☆40Updated 2 years ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆40Updated last week
- A shiny application to visualize MCscan result☆37Updated 3 years ago
- Dynamic Elongation of a Genome Assembly Path☆22Updated last year
- Pan-genome Construction and Population Structure Variation Calling pipeline☆42Updated last year
- ☆30Updated 9 months ago
- This is a method to find telomeres and centromeres in plants.☆42Updated 2 years ago
- scripts for the project of seven thaliana genomes assembly☆41Updated 4 years ago
- A tool for quick and accurate calculation of syntenic diversity.☆42Updated 2 weeks ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆42Updated 2 weeks ago
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C/CiFi or Hi-C.☆60Updated 3 months ago
- Analyses of sex chromosome evolution in songbirds☆16Updated 6 years ago
- ☆21Updated last year
- ☆42Updated last year
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆34Updated last year
- ☆45Updated 2 years ago
- Centromics: visualing centromeres with multiple omics data☆24Updated 7 months ago
- ☆28Updated 3 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- PanTE: A Comprehensive Framework for Transposable Element Discovery in Graph-based Pangenomes☆19Updated last week
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Updated 6 years ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆48Updated last month
- Automated pipeline for running CoalHMM☆13Updated last year
- HELIANO is a software for detection and classification of Helitron-like elements.☆31Updated 3 months ago
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆39Updated 2 weeks ago