chenym1 / genetribeLinks
A tool for performing collinearity-incorporating homology inference
☆32Updated last year
Alternatives and similar repositories for genetribe
Users that are interested in genetribe are comparing it to the libraries listed below
Sorting:
- ☆34Updated 10 months ago
- a Semi-automated pipeline for assembling T2T genome☆18Updated 2 months ago
- Plant genome assembly and annotation pipeline using snakemake☆44Updated 2 months ago
- Dynamic Elongation of a Genome Assembly Path☆21Updated last year
- ☆40Updated 2 years ago
- This is a method to find telomeres and centromeres in plants.☆41Updated 2 years ago
- scripts for the project of seven thaliana genomes assembly☆40Updated 4 years ago
- Centromics: visualing centromeres with multiple omics data☆23Updated 4 months ago
- ☆30Updated 6 months ago
- Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning☆29Updated 11 months ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- ☆21Updated 11 months ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆37Updated this week
- Pan-genome Construction and Population Structure Variation Calling pipeline☆41Updated 10 months ago
- BITACORA: A Bioinformatics tool for gene family annotation☆46Updated last month
- A tool for quick and accurate calculation of syntenic diversity.☆41Updated 5 months ago
- ☆24Updated last year
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆33Updated 9 months ago
- Analyses of sex chromosome evolution in songbirds☆16Updated 6 years ago
- ☆25Updated 3 years ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆67Updated 4 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆30Updated 5 months ago
- AlleleFinder is a tool for identifying allele genes from polyploid genome.☆30Updated 6 months ago
- ☆28Updated 3 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- HiCAT new project☆28Updated last month
- ☆41Updated 2 years ago
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆9Updated 4 months ago
- PanTE: A Comprehensive Framework for Transposable Element Discovery in Graph-based Pangenomes☆16Updated 2 weeks ago