chenym1 / genetribe
A tool for performing collinearity-incorporating homology inference
☆27Updated last year
Related projects ⓘ
Alternatives and complementary repositories for genetribe
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- Bulked-Segregant Analysis using vcf file with or without parents☆23Updated 7 months ago
- ☆36Updated last year
- ☆22Updated 2 months ago
- A shiny application to visualize MCscan result☆33Updated 2 years ago
- Centromics: visualing centromeres with multiple omics data☆22Updated 2 weeks ago
- ☆21Updated 2 years ago
- ☆20Updated 3 months ago
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆40Updated 10 months ago
- This is a method to find telomeres and centromeres in plants.☆37Updated last year
- Pan-genome Construction and Population Structure Variation Calling pipeline☆33Updated 2 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆16Updated last year
- Plant genome assembly and annotation pipeline using snakemake☆35Updated last year
- A tool for quick and accurate calculation of syntenic diversity.☆29Updated 2 months ago
- BITACORA: A Bioinformatics tool for gene family annotation☆42Updated 7 months ago
- HiCAT new project☆27Updated 11 months ago
- R package to draw syntenic plots in 3 different styles☆39Updated 11 months ago
- ☆29Updated last week
- Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…☆17Updated 5 months ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆29Updated 3 years ago
- ☆28Updated 2 months ago
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆18Updated last year
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆17Updated 11 months ago
- Resistify is a command line program that identifies and classifies NLRs from protein sequences☆26Updated this week
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆30Updated last month
- ☆22Updated last year
- ☆15Updated 2 years ago
- Yet another Hi-C scaffolding tool☆19Updated 3 weeks ago
- ☆24Updated 10 months ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆36Updated 4 months ago