Extensive de-novo TE Annotator
☆455May 12, 2026Updated last month
Alternatives and similar repositories for EDTA
Users that are interested in EDTA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆112Nov 17, 2025Updated 7 months ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆217Updated this week
- Neural network classification of TE☆100Apr 3, 2026Updated 3 months ago
- Earl Grey: A fully automated TE curation and annotation pipeline☆215Jun 23, 2026Updated last week
- De-Novo Repeat Discovery Tool☆242Jun 11, 2026Updated 3 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Python library to facilitate genome assembly, annotation, and comparative genomics☆919Jun 21, 2026Updated last week
- Synteny and Rearrangement Identifier☆474Jun 20, 2026Updated 2 weeks ago
- A parallel wrapper for LTR_FINDER☆55Mar 8, 2026Updated 3 months ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆464Jun 17, 2026Updated 2 weeks ago
- 3D de novo assembly (3D DNA) pipeline☆225Nov 29, 2023Updated 2 years ago
- k-mer based assembly evaluation☆344May 21, 2026Updated last month
- An accurate GFF3/GTF lift over pipeline☆546Aug 1, 2023Updated 2 years ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆567Feb 14, 2024Updated 2 years ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆179Oct 20, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- haplotypic duplication identification tool☆289Oct 30, 2025Updated 8 months ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆784May 31, 2026Updated last month
- SRF: Satellite Repeat Finder☆105Jan 8, 2024Updated 2 years ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆241Sep 6, 2024Updated last year
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆296May 28, 2026Updated last month
- A genome completeness evaluation tool based on miniprot☆248Jun 20, 2026Updated last week
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆115Jun 24, 2026Updated last week
- High-precision TE Annotator☆160Dec 4, 2025Updated 7 months ago
- A program to call variants from genome alignment☆83Apr 29, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Fast and accurate de novo assembler for long reads☆403May 10, 2024Updated 2 years ago
- Tool to plot synteny and structural rearrangements between genomes☆348Apr 7, 2025Updated last year
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆580May 18, 2026Updated last month
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆272Jun 22, 2026Updated last week
- De novo annotation of young retrotransposons☆46Apr 24, 2026Updated 2 months ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆401Apr 22, 2026Updated 2 months ago
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆194Oct 15, 2025Updated 8 months ago
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆292Oct 4, 2025Updated 9 months ago
- ☆247Jan 24, 2025Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆176Jun 23, 2026Updated last week
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆212Nov 18, 2022Updated 3 years ago
- Genome annotation with AUGUSTUS☆335May 30, 2026Updated last month
- ☆78Dec 4, 2019Updated 6 years ago
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆168Nov 4, 2025Updated 8 months ago
- Phylogenetic orthology inference for comparative genomics☆860Jul 15, 2025Updated 11 months ago
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆50Jan 16, 2024Updated 2 years ago