This is the standalone version of the EviAnn pipeline
☆147May 14, 2026Updated 2 weeks ago
Alternatives and similar repositories for EviAnn_release
Users that are interested in EviAnn_release are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆196Apr 27, 2026Updated last month
- ☆45Dec 11, 2025Updated 5 months ago
- A novel genome assembly pipeline based on deep learning☆70Dec 2, 2024Updated last year
- ☆27May 12, 2026Updated 2 weeks ago
- ☆93Apr 7, 2026Updated last month
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆172Oct 29, 2025Updated 7 months ago
- Using Deep Learning to predict gene annotations☆289May 21, 2026Updated last week
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆269Jan 5, 2026Updated 4 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆124May 4, 2026Updated 3 weeks ago
- Repeat-aware polishing genomes assembled using HiFi long reads☆102Apr 7, 2026Updated last month
- A gap-closing software tool that uses long reads to enhance genome assembly.☆23Apr 25, 2024Updated 2 years ago
- Identify and find telomeres, or telomeric repeats in a genome.☆164Nov 24, 2025Updated 6 months ago
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆36Apr 20, 2026Updated last month
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆395Apr 22, 2026Updated last month
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆149Apr 13, 2026Updated last month
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- ☆32Mar 3, 2026Updated 2 months ago
- ☆18Apr 28, 2026Updated last month
- A program for assessing the T2T genome continuity and completeness☆95Feb 28, 2026Updated 3 months ago
- Improved long-read assembly by preserving contained reads☆30Aug 22, 2024Updated last year
- a gap-filling tools of genome in complex region.☆26Dec 30, 2025Updated 4 months ago
- Robust identification of orthologous Synteny with the Orthology Index☆42May 22, 2026Updated last week
- A genome completeness evaluation tool based on miniprot☆242Sep 18, 2025Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Reduce genome assembly redundancy using shared mapped k-mer method.☆15Apr 28, 2025Updated last year
- Dynamic Elongation of a Genome Assembly Path☆25Apr 29, 2026Updated last month
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆35Jan 15, 2025Updated last year
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆87Dec 3, 2025Updated 5 months ago
- Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)☆247Apr 30, 2026Updated 3 weeks ago
- Telomere compliment tools☆26Nov 17, 2025Updated 6 months ago
- ☆42May 19, 2025Updated last year
- Consensus genome annotation using OMA☆31Jan 14, 2026Updated 4 months ago
- Yet another Hi-C scaffolding tool☆181Nov 4, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆164Nov 4, 2025Updated 6 months ago
- ☆160Apr 13, 2026Updated last month
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 3 years ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆33Jun 10, 2025Updated 11 months ago
- A organelle de novo genome assembly toolkit☆76Feb 22, 2025Updated last year
- Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…☆112Jan 30, 2026Updated 3 months ago
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆205Nov 23, 2025Updated 6 months ago