alekseyzimin / EviAnn_release
This is the standalone version of the EviAnn pipeline
☆28Updated last month
Alternatives and similar repositories for EviAnn_release:
Users that are interested in EviAnn_release are comparing it to the libraries listed below
- Improved Phased Assembler☆28Updated 3 years ago
- Multi-genome synteny block visualization tool☆32Updated 2 months ago
- ☆22Updated 7 months ago
- ☆27Updated last year
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆25Updated 3 years ago
- Yet another Hi-C scaffolding tool☆19Updated 5 months ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆13Updated 4 years ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆28Updated 2 months ago
- ☆35Updated last year
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated this week
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- FastK based version of Merqury☆23Updated last week
- Toolkit for evolutionary analyses of linkage groups☆28Updated 8 months ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆20Updated 4 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated last month
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆23Updated 2 weeks ago
- ☆25Updated last year
- Domain based annotation of transposable elements☆19Updated last month
- ☆34Updated 2 years ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆31Updated last week
- Compute N50/NG50 and auN/auNG☆31Updated last year
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆25Updated last month
- ☆16Updated 2 years ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 6 years ago
- SV genotyper for long reads with a variation graph☆12Updated last week
- A nextflow pipeline for polishing CLR assemblies☆17Updated 2 years ago