Alternatives and similar repositories for EviAnn_release

Users that are interested in EviAnn_release are comparing it to the libraries listed below

• ncbi / egapx

  View on GitHub
  Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation
  ☆181Dec 16, 2025Updated 2 months ago
• Kuanhao-Chao / LiftOn

  View on GitHub
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆121Nov 21, 2025Updated 2 months ago
• DessimozLab / OMArk

  View on GitHub
  ☆89Dec 3, 2025Updated 2 months ago
• zengxiaofei / HapHiC

  View on GitHub
  HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data
  ☆254Jan 5, 2026Updated last month
• aaranyue / quarTeT

  View on GitHub
  A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification
  ☆164Oct 29, 2025Updated 3 months ago
• Nextomics / NextPolish2

  View on GitHub
  Repeat-aware polishing genomes assembled using HiFi long reads
  ☆98Nov 12, 2025Updated 3 months ago
• usadellab / Helixer

  View on GitHub
  Using Deep Learning to predict gene annotations
  ☆276Feb 5, 2026Updated last week
• yanyew / SynGAP

  View on GitHub
  ☆45Dec 11, 2025Updated 2 months ago
• Jwindler / AutoHiC

  View on GitHub
  A novel genome assembly pipeline based on deep learning
  ☆68Dec 2, 2024Updated last year
• panlab-bioinfo / Gap-Aid

  View on GitHub
  ☆20Dec 8, 2025Updated 2 months ago
• at-cg / RAFT

  View on GitHub
  Improved long-read assembly by preserving contained reads
  ☆30Aug 22, 2024Updated last year
• i10labtitech / GINGER

  View on GitHub
  ☆29Feb 5, 2026Updated last week
• marbl / verkko

  View on GitHub
  Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…
  ☆381Feb 6, 2026Updated last week
• shelkmike / Mabs

  View on GitHub
  Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye
  ☆35Dec 24, 2025Updated last month
• yeeus / GCI

  View on GitHub
  A program for assessing the T2T genome continuity
  ☆92Dec 14, 2025Updated 2 months ago
• Gaius-Augustus / GALBA

  View on GitHub
  GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…
  ☆148Jan 27, 2025Updated last year
• JiaoLaboratory / CRAQ

  View on GitHub
  Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement
  ☆77Dec 3, 2025Updated 2 months ago
• BGI-Qingdao / TGS-GapCloser2

  View on GitHub
  A gap-closing software tool that uses long reads to enhance genome assembly.
  ☆23Apr 25, 2024Updated last year
• DessimozLab / OMAnnotator

  View on GitHub
  Consensus genome annotation using OMA
  ☆31Jan 14, 2026Updated last month
• chaoszhang / ASTER

  View on GitHub
  Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)
  ☆225Jan 4, 2026Updated last month
• ganlab / GALA

  View on GitHub
  Long-reads Gap-free Chromosome-scale Assembler
  ☆79Mar 21, 2023Updated 2 years ago
• huangnengCSU / compleasm

  View on GitHub
  A genome completeness evaluation tool based on miniprot
  ☆233Sep 18, 2025Updated 4 months ago
• hillerlab / TOGA

  View on GitHub
  TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…
  ☆203Nov 23, 2025Updated 2 months ago
• tolkit / telomeric-identifier

  View on GitHub
  Identify and find telomeres, or telomeric repeats in a genome.
  ☆158Nov 24, 2025Updated 2 months ago
• c-zhou / oatk

  View on GitHub
  A organelle de novo genome assembly toolkit
  ☆74Feb 22, 2025Updated 11 months ago
• kensung-lab / hypo-assembler

  View on GitHub
  ☆41May 19, 2025Updated 8 months ago
• junhaiqi / centroAnno

  View on GitHub
  ☆16Jan 14, 2026Updated last month
• panlab-bioinfo / TRFill

  View on GitHub
  a gap-filling tools of genome in complex region.
  ☆24Dec 30, 2025Updated last month
• EVidenceModeler / EVidenceModeler

  View on GitHub
  source code for EVM
  ☆122Nov 29, 2024Updated last year
• SunPengChuan / wgdi

  View on GitHub
  WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes
  ☆159Nov 4, 2025Updated 3 months ago
• Jianwei-Zhang / DEGAP

  View on GitHub
  Dynamic Elongation of a Genome Assembly Path
  ☆25Dec 15, 2025Updated 2 months ago
• phasegenomics / juicebox_scripts

  View on GitHub
  A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats
  ☆69May 22, 2021Updated 4 years ago
• DessimozLab / FastOMA

  View on GitHub
  FastOMA is a scalable software package to infer orthology relationship.
  ☆90Updated this week
• xiekunwhy / kmerDedup

  View on GitHub
  Reduce genome assembly redundancy using shared mapped k-mer method.
  ☆15Apr 28, 2025Updated 9 months ago
• wjwei-handsome / wgatools

  View on GitHub
  Whole Genome Alignment Tools
  ☆213Nov 6, 2025Updated 3 months ago
• EI-CoreBioinformatics / mikado

  View on GitHub
  Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…
  ☆109Jan 30, 2026Updated 2 weeks ago
• daewoooo / SVbyEye

  View on GitHub
  ☆145Nov 5, 2025Updated 3 months ago
• ShunOuchi / GreenHill

  View on GitHub
  De novo chromosome-level scaffolding and phasing tool using Hi-C
  ☆30Nov 23, 2025Updated 2 months ago
• vollgerlab / StainedGlass

  View on GitHub
  Make colorful identity heatmaps of genomic sequence
  ☆128May 24, 2024Updated last year