Make colorful identity heatmaps of genomic sequence
☆140May 24, 2024Updated 2 years ago
Alternatives and similar repositories for StainedGlass
Users that are interested in StainedGlass are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆43Oct 6, 2025Updated last year
- ☆199Updated this week
- RepeatIdentifier☆75Mar 19, 2025Updated last year
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 3 years ago
- Identify and find telomeres, or telomeric repeats in a genome.☆177Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆188Jun 23, 2026Updated 3 months ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆43Nov 25, 2024Updated last year
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆113Nov 17, 2025Updated 10 months ago
- SRF: Satellite Repeat Finder☆110Jan 8, 2024Updated 2 years ago
- HiCAT new project☆39May 18, 2025Updated last year
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated last year
- ☆45Dec 29, 2025Updated 9 months ago
- Centromics: visualing centromeres with multiple omics data☆28Mar 4, 2025Updated last year
- ☆23Aug 8, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A genome-scale, fast, and precise segmental duplications mapping tool☆36Sep 11, 2024Updated 2 years ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆61Jul 19, 2025Updated last year
- A tool for performing collinearity-incorporating homology inference☆34Jul 17, 2026Updated 2 months ago
- A genome completeness evaluation tool based on miniprot☆267Aug 17, 2026Updated last month
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆76Jun 4, 2026Updated 4 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆49Feb 23, 2021Updated 5 years ago
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- ☆42May 19, 2025Updated last year
- Extracting paths from assembly graphs☆26Jun 22, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆25Sep 22, 2026Updated 2 weeks ago
- Genome alignment and synteny plots☆36Mar 24, 2026Updated 6 months ago
- A organelle de novo genome assembly toolkit☆85Feb 22, 2025Updated last year
- oxford dot plots☆175Sep 20, 2026Updated 2 weeks ago
- Figures for the CHM13 T2T SD paper.☆12Sep 12, 2021Updated 5 years ago
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆287Aug 10, 2026Updated 2 months ago
- Synteny and Rearrangement Identifier☆491Jul 1, 2026Updated 3 months ago
- k-mer based assembly evaluation☆354Jul 6, 2026Updated 3 months ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆816May 31, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆166Apr 13, 2026Updated 5 months ago
- Using Deep Learning to predict gene annotations☆308Updated this week
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆211Nov 23, 2025Updated 10 months ago
- Repeat-aware polishing genomes assembled using HiFi long reads☆105Apr 7, 2026Updated 6 months ago
- This is the standalone version of the EviAnn pipeline☆187Updated this week
- Detecting multi-genome synteny using minimizer graph mapping☆117Sep 28, 2026Updated last week
- An ultra-fast and efficient genomic tool for coverage calculation☆175Jun 9, 2026Updated 4 months ago