Make colorful identity heatmaps of genomic sequence
☆140May 24, 2024Updated 2 years ago
Alternatives and similar repositories for StainedGlass
Users that are interested in StainedGlass are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆43Oct 6, 2025Updated last year
- ☆205Oct 5, 2026Updated 3 weeks ago
- RepeatIdentifier☆76Mar 19, 2025Updated last year
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 3 years ago
- Identify and find telomeres, or telomeric repeats in a genome.☆180Oct 23, 2026Updated last week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Centromics: visualing centromeres with multiple omics data☆28Mar 4, 2025Updated last year
- SRF: Satellite Repeat Finder☆110Jan 8, 2024Updated 2 years ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆191Jun 23, 2026Updated 4 months ago
- Yet another Hi-C scaffolding tool☆185Nov 4, 2024Updated last year
- Tool for globally phasing diploid assembly graphs with orthogonal data☆43Nov 25, 2024Updated last year
- ☆26Oct 22, 2026Updated last week
- A program for assessing the T2T genome continuity and completeness☆98Oct 13, 2026Updated 2 weeks ago
- Synteny and Rearrangement Identifier☆496Jul 1, 2026Updated 3 months ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆114Nov 17, 2025Updated 11 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated last year
- A gap-closing software tool that uses long reads to enhance genome assembly.☆251Sep 6, 2024Updated 2 years ago
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆77Jun 4, 2026Updated 4 months ago
- ☆45Dec 29, 2025Updated 10 months ago
- ☆27Jun 27, 2026Updated 4 months ago
- Detecting multi-genome synteny using minimizer graph mapping☆117Sep 28, 2026Updated last month
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆288Aug 10, 2026Updated 2 months ago
- Inpactor2: LTR retrotransposon detector and classificator using Deep Learning☆30Jun 17, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- HiCAT new project☆40May 18, 2025Updated last year
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆62Jul 19, 2025Updated last year
- Repeat-aware polishing genomes assembled using HiFi long reads☆105Apr 7, 2026Updated 6 months ago
- A genome completeness evaluation tool based on miniprot☆270Oct 7, 2026Updated 3 weeks ago
- k-mer based assembly evaluation☆357Jul 6, 2026Updated 3 months ago
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆212Nov 23, 2025Updated 11 months ago
- A tool for visualization of pairwise alignments of multiple sequences☆19Aug 12, 2025Updated last year
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆422Updated this week
- High-precision TE Annotator☆168Dec 4, 2025Updated 10 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆41Feb 22, 2023Updated 3 years ago
- Tool to plot synteny and structural rearrangements between genomes☆359Jul 27, 2026Updated 3 months ago
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆117Jul 27, 2026Updated 3 months ago
- Evaluating genome assemblies☆128Oct 21, 2026Updated last week
- Dynamic Elongation of a Genome Assembly Path☆32Updated this week
- ☆42May 19, 2025Updated last year
- Using Deep Learning to predict gene annotations☆313Oct 23, 2026Updated last week