Alternatives and similar repositories for TRASH

Users that are interested in TRASH are comparing it to the libraries listed below

• 0xTCG / biser
  A fast tool for detecting and decomposing segmental duplications in genome assemblies
  ☆55Updated 5 months ago
• c-zhou / oatk
  A organelle de novo genome assembly toolkit
  ☆73Updated 10 months ago
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆49Updated 2 months ago
• phasegenomics / juicebox_scripts
  A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats
  ☆69Updated 4 years ago
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆36Updated 3 years ago
• JiaoLaboratory / CRAQ
  Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement
  ☆77Updated last month
• CAFS-bioinformatics / LR_Gapcloser
  use long sequenced reads to close gaps in assemblies
  ☆39Updated 7 years ago
• ShiuLab / PseudogenePipeline
  ☆41Updated 2 years ago
• yeeus / GCI
  A program for assessing the T2T genome continuity
  ☆92Updated last month
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆59Updated 2 years ago
• hillerlab / make_lastz_chains
  Portable solution to generate genome alignment chains using lastz
  ☆60Updated 3 weeks ago
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆38Updated 3 years ago
• LiaOb21 / colora
  A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitoch…
  ☆31Updated 8 months ago
• ChongLab / Inspector
  A tool for evaluate long-read de novo assembly results
  ☆48Updated last year
• simon19891216 / CentIER
  ☆43Updated 5 months ago
• bcgsc / ntSynt-viz
  Multi-genome synteny block visualization tool
  ☆52Updated last week
• DessimozLab / OMArk
  ☆88Updated last month
• mahulchak / svmu
  A program to call variants from genome alignment
  ☆81Updated 8 months ago
• piosierra / pantera
  Identification of transposable element families from pangenome polymorphisms
  ☆55Updated 7 months ago
• mapleforest / HaploMerger2
  ☆45Updated 9 years ago
• heche-psb / wgd
  wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication
  ☆37Updated 11 months ago
• schneebergerlab / fixchr
  ☆21Updated last year
• JiaoLab2021 / varigraph
  An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes
  ☆44Updated 3 months ago
• oushujun / LTR_FINDER_parallel
  A parallel wrapper for LTR_FINDER
  ☆55Updated 9 months ago
• liushoucheng / SPART
  a Semi-automated pipeline for assembling T2T genome
  ☆25Updated 3 months ago
• PacificBiosciences / jasmine
  Call select base modifications in PacBio HiFi reads
  ☆15Updated 2 months ago
• celphin / RepeatOBserverV1
  An R package to visualize chromosome scale repeat patterns and predict centromere locations.
  ☆43Updated 2 months ago
• SAMtoBAM / MUMandCo
  MUM&Co uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation
  ☆76Updated this week
• ArimaGenomics / mapping_pipeline
  Mapping pipeline for data generated using Arima-HiC
  ☆81Updated last year
• Dee-chen / Tree2gd
  ☆45Updated 3 years ago