vlothec / TRASHLinks
RepeatIdentifier
☆71Updated 10 months ago
Alternatives and similar repositories for TRASH
Users that are interested in TRASH are comparing it to the libraries listed below
Sorting:
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆55Updated 6 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69Updated 4 years ago
- ☆41Updated 2 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆36Updated 3 years ago
- use long sequenced reads to close gaps in assemblies☆40Updated 7 years ago
- A shiny application to visualize MCscan result☆38Updated 3 years ago
- Portable solution to generate genome alignment chains using lastz☆60Updated last month
- ☆44Updated 6 months ago
- A organelle de novo genome assembly toolkit☆73Updated 11 months ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆41Updated 2 weeks ago
- TSEBRA: Transcript Selector for BRAKER☆49Updated 2 months ago
- a Semi-automated pipeline for assembling T2T genome☆25Updated 3 months ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 11 months ago
- ☆45Updated 3 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆37Updated last year
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago
- A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitoch…☆32Updated 8 months ago
- A tool for evaluate long-read de novo assembly results☆48Updated last year
- A program for assessing the T2T genome continuity☆92Updated last month
- DNA序列比对结果 可视化展示工具☆57Updated 3 years ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆32Updated 8 months ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆77Updated 2 months ago
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆44Updated 4 months ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆45Updated last year
- ☆45Updated 9 years ago
- HiCAT new project☆31Updated 8 months ago
- meta-pipeline for repetitive element de-fragmentation and annotation☆28Updated 5 years ago
- ☆89Updated 2 months ago
- Multi-genome synteny block visualization tool☆52Updated last week
- Plant genome assembly and annotation pipeline using snakemake☆52Updated 8 months ago