vlothec / TRASHLinks
RepeatIdentifier
☆63Updated 3 months ago
Alternatives and similar repositories for TRASH
Users that are interested in TRASH are comparing it to the libraries listed below
Sorting:
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆48Updated last year
- TSEBRA: Transcript Selector for BRAKER☆47Updated 7 months ago
- A organelle de novo genome assembly toolkit☆60Updated 4 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆66Updated 4 years ago
- Identification of transposable element families from pangenome polymorphisms☆45Updated 3 weeks ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- Plant genome assembly and annotation pipeline using snakemake☆44Updated last month
- ☆30Updated 5 months ago
- ☆44Updated 8 years ago
- ☆40Updated 2 years ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆63Updated 5 months ago
- A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitoch…☆27Updated last month
- This is the standalone version of the EviAnn pipeline☆97Updated last week
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆34Updated 4 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- A program for assessing the T2T genome continuity☆79Updated last week
- Pipeline to convert a haploid assembly into diploid☆100Updated 5 months ago
- Portable solution to generate genome alignment chains using lastz☆57Updated 3 weeks ago
- BITACORA: A Bioinformatics tool for gene family annotation☆45Updated 3 weeks ago
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆57Updated 2 years ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆36Updated last week
- ☆32Updated 9 months ago
- A tool for evaluate long-read de novo assembly results☆47Updated 9 months ago
- A tool for plotting CAFE5 gene family expansion/contraction result☆31Updated last year
- Tutorials on evolutionary genomics☆45Updated 3 years ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆51Updated 5 years ago
- AlleleFinder is a tool for identifying allele genes from polyploid genome.☆30Updated 5 months ago
- Genome Annotation Pipeline☆36Updated 10 months ago