Alternatives and similar repositories for TRASH

Users that are interested in TRASH are comparing it to the libraries listed below

• 0xTCG / biser
  A fast tool for detecting and decomposing segmental duplications in genome assemblies
  ☆48Updated last year
• c-zhou / oatk
  A organelle de novo genome assembly toolkit
  ☆59Updated 3 months ago
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆34Updated 3 years ago
• mapleforest / HaploMerger2
  ☆44Updated 8 years ago
• CAFS-bioinformatics / LR_Gapcloser
  use long sequenced reads to close gaps in assemblies
  ☆37Updated 6 years ago
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆47Updated 6 months ago
• phasegenomics / juicebox_scripts
  A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats
  ☆67Updated 4 years ago
• DessimozLab / OMArk
  ☆73Updated 2 months ago
• JiaoLaboratory / CRAQ
  Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement
  ☆62Updated 4 months ago
• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆44Updated 3 weeks ago
• TF-Chan-Lab / panGraphViewer
  Show pangenome graphs in an easy way
  ☆56Updated 2 years ago
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆80Updated 4 years ago
• ShiuLab / PseudogenePipeline
  ☆40Updated last year
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆36Updated 2 years ago
• alekseyzimin / EviAnn_release
  This is the standalone version of the EviAnn pipeline
  ☆91Updated this week
• yeeus / GCI
  A program for assessing the T2T genome continuity
  ☆77Updated last month
• ChongLab / Inspector
  A tool for evaluate long-read de novo assembly results
  ☆47Updated 9 months ago
• Jwindler / AutoHiC
  A novel genome assembly pipeline based on deep learning
  ☆62Updated 6 months ago
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆74Updated 4 years ago
• nclark-lab / RERconverge
  Analysis of convergence between organismal traits and DNA/protein sequences
  ☆53Updated last week
• hillerlab / make_lastz_chains
  Portable solution to generate genome alignment chains using lastz
  ☆56Updated last week
• Immortal2333 / Telomeres_and_Centromeres
  This is a method to find telomeres and centromeres in plants.
  ☆40Updated last year
• wjian8 / psvcp_v1.01
  Pan-genome Construction and Population Structure Variation Calling pipeline
  ☆40Updated 8 months ago
• piosierra / pantera
  Identification of transposable element families from pangenome polymorphisms
  ☆45Updated this week
• SAMtoBAM / MUMandCo
  MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation
  ☆70Updated 2 months ago
• Yandell-Lab / maker
  Genome Annotation Pipeline
  ☆35Updated 9 months ago
• simonhmartin / tutorials
  Tutorials on evolutionary genomics
  ☆44Updated 3 years ago
• SwiftSeal / resistify
  Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…
  ☆34Updated this week
• LiLabAtVT / DeepTE
  Neural network classification of TE
  ☆87Updated 2 years ago
• ellenbell / FasTE
  A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…
  ☆27Updated 2 years ago