Gaius-Augustus / GALBALinks
GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from one or several closely related species are available.
☆148Updated 7 months ago
Alternatives and similar repositories for GALBA
Users that are interested in GALBA are comparing it to the libraries listed below
Sorting:
- A genome completeness evaluation tool based on miniprot☆217Updated 3 months ago
- Version 5 of the CAFE phylogenetics software☆142Updated 6 months ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆146Updated last month
- a tool for inferring species tree from sequencing reads☆150Updated 2 weeks ago
- Metagenomic classification of long-read sequencing data☆93Updated last week
- oxford dot plots☆158Updated 2 months ago
- Constructing a pangenome gene graph☆195Updated 2 weeks ago
- Nanopore data assembler☆160Updated 3 years ago
- Fast and accurately polish the genome generated by long reads.☆232Updated 7 months ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆143Updated 3 weeks ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆99Updated 6 months ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆109Updated last year
- source code for EVM☆116Updated 9 months ago
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆111Updated last year
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆170Updated 3 weeks ago
- Identify and find telomeres, or telomeric repeats in a genome.☆134Updated last month
- Foreign Contamination Screening caller scripts and documentation☆135Updated 5 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆186Updated 3 months ago
- ☆216Updated 7 months ago
- High-precision TE Annotator☆124Updated 2 months ago
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆176Updated 3 months ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆153Updated last month
- Research release basecalling models and configurations☆115Updated 3 months ago
- Interactive quality assessment of genome assemblies☆105Updated 3 months ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆127Updated 9 months ago
- Structural Variant Identification Method using Genome Assemblies☆122Updated 2 years ago
- Create a tree using Mash distances☆170Updated last year
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆105Updated 3 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆172Updated last year
- ☆208Updated 3 weeks ago