Gaius-Augustus / GALBA
GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from one or several closely related species are available.
☆139Updated 3 weeks ago
Alternatives and similar repositories for GALBA:
Users that are interested in GALBA are comparing it to the libraries listed below
- A genome completeness evaluation tool based on miniprot☆190Updated 4 months ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆133Updated 2 months ago
- Constructing a pangenome gene graph☆181Updated 7 months ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆118Updated 2 weeks ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆174Updated last month
- a tool for inferring species tree from sequencing reads☆146Updated this week
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆96Updated 10 months ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆90Updated last week
- Fast and accurately polish the genome generated by long reads.☆217Updated last month
- Any Way to Show Multi genomic Synteny☆173Updated 4 months ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆196Updated this week
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆113Updated last month
- Metagenomic classification of long-read sequencing data☆75Updated last week
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆157Updated last year
- Evaluation and polishing workflows for T2T genome assemblies☆120Updated 4 months ago
- ☆171Updated last week
- oxford dot plots☆145Updated 3 weeks ago
- Pairwise whole genome aligner☆147Updated this week
- List of genome assembly tools☆58Updated 3 weeks ago
- Earl Grey: A fully automated TE curation and annotation pipeline☆156Updated 2 weeks ago
- Version 5 of the CAFE phylogenetics software☆125Updated last week
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆157Updated this week
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆135Updated last month
- a short-read polishing tool for long-read assemblies☆153Updated 8 months ago
- Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.☆138Updated last year
- Nanopore data assembler☆143Updated 2 years ago
- haplotypic duplication identification tool☆221Updated last year
- Interactive quality assessment of genome assemblies☆93Updated last month
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆56Updated last year
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆107Updated last year