Gaius-Augustus / GALBALinks
GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from one or several closely related species are available.
☆146Updated 5 months ago
Alternatives and similar repositories for GALBA
Users that are interested in GALBA are comparing it to the libraries listed below
Sorting:
- A genome completeness evaluation tool based on miniprot☆215Updated 2 months ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆138Updated 3 weeks ago
- Constructing a pangenome gene graph☆193Updated last month
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆165Updated last month
- Find, circularise and annotate mitogenome from PacBio assemblies☆185Updated 2 months ago
- Metagenomic classification of long-read sequencing data☆86Updated this week
- Nanopore data assembler☆157Updated 3 years ago
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆173Updated 2 months ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆98Updated 5 months ago
- oxford dot plots☆156Updated 3 weeks ago
- High-precision TE Annotator☆121Updated 2 weeks ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆139Updated 2 weeks ago
- source code for EVM☆112Updated 7 months ago
- a short-read polishing tool for long-read assemblies☆171Updated last year
- Evaluation and polishing workflows for T2T genome assemblies☆131Updated last week
- Any Way to Show Multi genomic Synteny☆197Updated last week
- a tool for inferring species tree from sequencing reads☆150Updated 4 months ago
- Fast and accurately polish the genome generated by long reads.☆227Updated 6 months ago
- Identify and find telomeres, or telomeric repeats in a genome.☆132Updated last week
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆145Updated 2 weeks ago
- Version 5 of the CAFE phylogenetics software☆134Updated 5 months ago
- ☆200Updated 2 months ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆106Updated last year
- Structural Variant Identification Method using Genome Assemblies☆121Updated 2 years ago
- Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.☆154Updated 3 months ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆202Updated 10 months ago
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆191Updated 2 months ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆155Updated last month
- base-accurate DNA sequence alignments using WFA and mashmap3☆193Updated last week
- ☆151Updated 2 months ago