Gaius-Augustus / GALBALinks
GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from one or several closely related species are available.
☆147Updated 9 months ago
Alternatives and similar repositories for GALBA
Users that are interested in GALBA are comparing it to the libraries listed below
Sorting:
- A genome completeness evaluation tool based on miniprot☆228Updated 2 months ago
- Metagenomic classification of long-read sequencing data☆96Updated 2 weeks ago
- a tool for inferring species tree from sequencing reads☆153Updated last month
- Version 5 of the CAFE phylogenetics software☆151Updated 9 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆190Updated 6 months ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆181Updated 2 months ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆150Updated 2 weeks ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆111Updated 2 months ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆100Updated this week
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆165Updated 4 months ago
- List of genome assembly tools☆83Updated 2 weeks ago
- Identify and find telomeres, or telomeric repeats in a genome.☆149Updated 4 months ago
- Constructing a pangenome gene graph☆198Updated 3 months ago
- High-precision TE Annotator☆137Updated 3 weeks ago
- source code for EVM☆118Updated 11 months ago
- Nanopore data assembler☆161Updated 3 years ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆157Updated 3 weeks ago
- Foreign Contamination Screening caller scripts and documentation☆150Updated 8 months ago
- Create a tree using Mash distances☆175Updated 2 years ago
- This is the standalone version of the EviAnn pipeline☆127Updated this week
- oxford dot plots☆159Updated last month
- Interactive quality assessment of genome assemblies☆114Updated 6 months ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆96Updated last year
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆106Updated last week
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆199Updated 2 months ago
- Fast and accurately polish the genome generated by long reads.☆234Updated 10 months ago
- Structural Variant Identification Method using Genome Assemblies☆128Updated 3 years ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆133Updated last year
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆114Updated 5 months ago
- Bioinformatics tool for Locus Visualisation☆143Updated 3 weeks ago