CSU-KangHu / HiTELinks
High-precision TE Annotator
☆140Updated last week
Alternatives and similar repositories for HiTE
Users that are interested in HiTE are comparing it to the libraries listed below
Sorting:
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆106Updated last week
- tomato graph pangenome☆85Updated 3 years ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆98Updated last year
- Structural Variant Identification Method using Genome Assemblies☆128Updated 3 years ago
- Application of pan-genome for population☆115Updated last month
- This is the standalone version of the EviAnn pipeline☆130Updated last week
- Evaluating genome assemblies☆109Updated 3 months ago
- Evaluation and polishing workflows for T2T genome assemblies☆141Updated 5 months ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆101Updated 3 weeks ago
- Collection of tools for the analysis of CpG data☆101Updated 5 months ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆158Updated last month
- Version 5 of the CAFE phylogenetics software☆155Updated 10 months ago
- Neural network classification of TE☆97Updated 2 months ago
- Detailed bioinformatics scripts and methods used in the NAM genome paper.☆86Updated 11 months ago
- Yet another k-mer analyzer☆152Updated 2 weeks ago
- A pipeline used to identify different modes of duplicated gene pairs☆114Updated 4 months ago
- source code for EVM☆119Updated last year
- ☆83Updated last year
- A list of software for pangenomics☆162Updated last week
- A genome completeness evaluation tool based on miniprot☆230Updated 2 months ago
- A organelle de novo genome assembly toolkit☆70Updated 9 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆190Updated 7 months ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆53Updated 5 years ago
- Identify and find telomeres, or telomeric repeats in a genome.☆150Updated 2 weeks ago
- ☆144Updated last month
- NLR-Annotator upload☆75Updated 2 years ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆111Updated 3 months ago
- PacBio BAM toolkit☆48Updated 9 months ago
- Make colorful identity heatmaps of genomic sequence☆126Updated last year
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆84Updated 4 years ago