High-precision TE Annotator
☆152Dec 4, 2025Updated 4 months ago
Alternatives and similar repositories for HiTE
Users that are interested in HiTE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆246Updated this week
- A genome completeness evaluation tool based on miniprot☆238Sep 18, 2025Updated 6 months ago
- A program for assessing the T2T genome continuity☆94Feb 28, 2026Updated last month
- A novel genome assembly pipeline based on deep learning☆70Dec 2, 2024Updated last year
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆113Apr 7, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆35Mar 5, 2026Updated last month
- PECAT, a phased error correct and assembly tool☆62Dec 8, 2025Updated 4 months ago
- haplotypic duplication identification tool☆280Oct 30, 2025Updated 5 months ago
- A pipeline for genomic variant detection with genome assemblies at population scale☆39Jun 3, 2025Updated 10 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆62Mar 12, 2026Updated last month
- Extensive de-novo TE Annotator☆439Apr 5, 2026Updated last week
- Earl Grey: A fully automated TE curation and annotation pipeline☆204Updated this week
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆261Jan 5, 2026Updated 3 months ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆167Oct 29, 2025Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆37Oct 29, 2025Updated 5 months ago
- A tool for quick and accurate calculation of syntenic diversity.☆42Sep 22, 2025Updated 6 months ago
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated 7 months ago
- Repeat-aware polishing genomes assembled using HiFi long reads☆100Apr 7, 2026Updated last week
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆189Oct 15, 2025Updated 5 months ago
- Application of pan-genome for population☆117Oct 26, 2025Updated 5 months ago
- ☆28Oct 20, 2023Updated 2 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆34Jan 3, 2022Updated 4 years ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆233Sep 6, 2024Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Methylatino phasing using PacBio CCS reads☆14Dec 13, 2024Updated last year
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 3 years ago
- Using Deep Learning to predict gene annotations☆281Mar 6, 2026Updated last month
- Any Way to Show Multi genomic Synteny☆223Jul 4, 2025Updated 9 months ago
- Evaluating genome assemblies☆119Mar 3, 2026Updated last month
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆162Nov 4, 2025Updated 5 months ago
- An Example of Subgenome Phasing for Complex Allopolyploidy☆15Nov 6, 2025Updated 5 months ago
- A organelle de novo genome assembly toolkit☆76Feb 22, 2025Updated last year
- A genomic k-mer counter (and sequence utility) with nice features.☆165Jul 4, 2025Updated 9 months ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Detecting multi-genome synteny using minimizer graph mapping☆106Apr 2, 2026Updated last week
- An ultra-fast and efficient genomic tool for coverage calculation☆171Feb 9, 2026Updated 2 months ago
- Align proteins to genomes with splicing and frameshift☆398Jan 5, 2026Updated 3 months ago
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆23Jan 21, 2026Updated 2 months ago
- Identification of transposable element families from pangenome polymorphisms☆56Jun 3, 2025Updated 10 months ago
- Official home of genome aligner based upon notion of Cactus graphs☆671Apr 3, 2026Updated last week
- Synteny and Rearrangement Identifier☆460Mar 17, 2026Updated 3 weeks ago