Alternatives and similar repositories for HiTE:

Users that are interested in HiTE are comparing it to the libraries listed below

• YaoZhou89 / TGG
  tomato graph pangenome
  ☆81Updated 2 years ago
• eldariont / svim-asm
  Structural Variant Identification Method using Genome Assemblies
  ☆112Updated 2 years ago
• zhangrengang / TEsorter
  TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes
  ☆95Updated 2 months ago
• starskyzheng / panpop
  Application of pan-genome for population
  ☆104Updated 6 months ago
• aaranyue / quarTeT
  A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification
  ☆130Updated last month
• sheinasim-USDA / HiFiAdapterFilt
  Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
  ☆87Updated 9 months ago
• huangnengCSU / compleasm
  A genome completeness evaluation tool based on miniprot
  ☆209Updated last week
• arangrhie / T2T-Polish
  Evaluation and polishing workflows for T2T genome assemblies
  ☆128Updated 6 months ago
• marbl / meryl
  A genomic k-mer counter (and sequence utility) with nice features.
  ☆135Updated 2 months ago
• EVidenceModeler / EVidenceModeler
  source code for EVM
  ☆109Updated 5 months ago
• qjiangzhao / TEtrimmer
  TEtrimmer: a novel tool to automate manual curation of transposable elements
  ☆69Updated last week
• mobinasri / flagger
  Evaluating genome assemblies
  ☆88Updated last month
• ArimaGenomics / mapping_pipeline
  Mapping pipeline for data generated using Arima-HiC
  ☆76Updated 11 months ago
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆181Updated 2 months ago
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆81Updated 3 months ago
• EichlerLab / pav
  Phased assembly variant caller
  ☆112Updated 5 months ago
• hahnlab / CAFE5
  Version 5 of the CAFE phylogenetics software
  ☆131Updated 2 months ago
• chenlianfu / geta
  ☆78Updated 9 months ago
• mcfrith / last-genome-alignments
  ☆61Updated last year
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆128Updated 2 weeks ago
• qiao-xin / DupGen_finder
  A pipeline used to identify different modes of duplicated gene pairs
  ☆99Updated last month
• c-zhou / oatk
  A organelle de novo genome assembly toolkit
  ☆59Updated 2 months ago
• marschall-lab / panacus
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
  ☆102Updated last month
• marbl / ModDotPlot
  ☆145Updated 2 weeks ago
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆187Updated last month
• tolkit / telomeric-identifier
  Identify and find telomeres, or telomeric repeats in a genome.
  ☆125Updated last month
• GaetanBenoitDev / metaMDBG
  MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.
  ☆151Updated 5 months ago
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆151Updated 3 years ago
• bcgsc / straglr
  Tandem repeat expansion detection or genotyping from long-read alignments
  ☆103Updated 2 months ago
• LiLabAtVT / DeepTE
  Neural network classification of TE
  ☆88Updated 2 years ago