CSU-KangHu / HiTELinks
High-precision TE Annotator
☆149Updated last month
Alternatives and similar repositories for HiTE
Users that are interested in HiTE are comparing it to the libraries listed below
Sorting:
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆110Updated 3 weeks ago
- This is the standalone version of the EviAnn pipeline☆135Updated 2 weeks ago
- Structural Variant Identification Method using Genome Assemblies☆133Updated 3 years ago
- Application of pan-genome for population☆116Updated 3 months ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆102Updated last year
- tomato graph pangenome☆87Updated 3 years ago
- A genome completeness evaluation tool based on miniprot☆233Updated 4 months ago
- Evaluating genome assemblies☆114Updated 2 weeks ago
- Collection of tools for the analysis of CpG data☆104Updated 6 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆191Updated 8 months ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆163Updated 3 months ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆103Updated 2 months ago
- A list of software for pangenomics☆166Updated 2 weeks ago
- Detailed bioinformatics scripts and methods used in the NAM genome paper.☆88Updated last year
- Pangenome-based genome inference☆153Updated last month
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆158Updated 2 months ago
- A pipeline used to identify different modes of duplicated gene pairs☆116Updated 6 months ago
- Yet another k-mer analyzer☆157Updated last month
- Neural network classification of TE☆97Updated 3 months ago
- source code for EVM☆122Updated last year
- ☆86Updated last year
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆53Updated 5 years ago
- Evaluation and polishing workflows for T2T genome assemblies☆145Updated 6 months ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆112Updated 4 months ago
- Identify and find telomeres, or telomeric repeats in a genome.☆156Updated 2 months ago
- ☆146Updated 2 months ago
- Version 5 of the CAFE phylogenetics software☆157Updated 11 months ago
- Constructing a pangenome gene graph☆203Updated 5 months ago
- Reference-free profiling of polyploid genomes☆140Updated 3 months ago
- ☆179Updated 3 months ago