NBISweden / AGATLinks
Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/
☆519Updated last week
Alternatives and similar repositories for AGAT
Users that are interested in AGAT are comparing it to the libraries listed below
Sorting:
- Transcript assembly and quantification for RNA-Seq☆458Updated 3 weeks ago
- An accurate GFF3/GTF lift over pipeline☆493Updated 2 years ago
- TransDecoder source☆296Updated 10 months ago
- ☆259Updated this week
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆426Updated 7 months ago
- Plotting scripts for long read sequencing data☆491Updated last week
- Plot structural variant signals from many BAMs and CRAMs☆544Updated last year
- Structural variation caller using third generation sequencing☆610Updated last month
- Tools for fast and flexible genome assembly scaffolding and improvement☆520Updated last year
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆521Updated 5 months ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆419Updated 6 months ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆271Updated last year
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆429Updated this week
- adapter trimmer for Oxford Nanopore reads☆368Updated last year
- Official home of genome aligner based upon notion of Cactus graphs☆594Updated this week
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆239Updated 4 years ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆665Updated 4 months ago
- A complete pipeline for metagenomic analysis☆422Updated 3 weeks ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆266Updated last month
- Mummer alignment tool☆521Updated 6 months ago
- Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.☆369Updated last month
- Eukaryotic Genome Annotation Pipeline☆359Updated last month
- Genome Assembly and Annotation Service code☆214Updated last year
- A quality control analysis tool for high throughput sequencing data☆520Updated last year
- Fast genome-wide functional annotation through orthology assignment☆640Updated last month
- RNA-seq workflow using STAR and DESeq2☆344Updated last year
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆466Updated last week
- parallel fastq-dump wrapper☆299Updated 2 years ago
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆448Updated last year
- A flexible pipeline for complete analysis of bacterial genomes☆467Updated this week