NBISweden / AGATLinks
Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/
☆509Updated this week
Alternatives and similar repositories for AGAT
Users that are interested in AGAT are comparing it to the libraries listed below
Sorting:
- TransDecoder source☆291Updated 8 months ago
- Genome Assembly and Annotation Service code☆212Updated last year
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆419Updated 5 months ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆262Updated last month
- Structural variation caller using third generation sequencing☆596Updated 2 weeks ago
- Plot structural variant signals from many BAMs and CRAMs☆543Updated 11 months ago
- Transcript assembly and quantification for RNA-Seq☆445Updated last week
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆234Updated 4 years ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆511Updated last year
- An accurate GFF3/GTF lift over pipeline☆486Updated last year
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆643Updated 3 months ago
- ☆253Updated last year
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆312Updated last year
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆269Updated last year
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆227Updated this week
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆411Updated 5 months ago
- RNA-seq workflow using STAR and DESeq2☆341Updated 10 months ago
- Fast and accurate de novo assembler for long reads☆388Updated last year
- Pilon is an automated genome assembly improvement and variant detection tool☆367Updated 3 years ago
- Plotting scripts for long read sequencing data☆482Updated last month
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆215Updated 2 months ago
- Nanopore demultiplexing, QC and alignment pipeline☆203Updated 3 weeks ago
- SortMeRNA: next-generation sequence filtering and alignment tool☆271Updated 5 months ago
- This Snakemake pipeline implements the GATK best-practices workflow☆254Updated 2 years ago
- A complete pipeline for metagenomic analysis☆416Updated last week
- Read trimming tool for Illumina NGS data.☆138Updated 10 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆324Updated last year
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆270Updated 4 months ago
- Genome browser and variant annotation☆310Updated last week
- Extensive de-novo TE Annotator☆390Updated 2 weeks ago