Alternatives and similar repositories for Liftoff

Users that are interested in Liftoff are comparing it to the libraries listed below

• TransDecoder / TransDecoder
  TransDecoder source
  ☆298Updated last month
• malonge / RagTag
  Tools for fast and flexible genome assembly scaffolding and improvement
  ☆538Updated last year
• usadellab / Trimmomatic
  ☆274Updated last month
• wdecoster / NanoPlot
  Plotting scripts for long read sequencing data
  ☆507Updated 2 months ago
• Gaius-Augustus / BRAKER
  BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…
  ☆430Updated 3 weeks ago
• rrwick / Porechop
  adapter trimmer for Oxford Nanopore reads
  ☆375Updated last year
• ryanlayer / samplot
  Plot structural variant signals from many BAMs and CRAMs
  ☆555Updated last year
• broadinstitute / pilon
  Pilon is an automated genome assembly improvement and variant detection tool
  ☆371Updated 3 years ago
• rrwick / Filtlong
  quality filtering tool for long reads
  ☆374Updated 2 months ago
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆243Updated 4 years ago
• nextgenusfs / funannotate
  Eukaryotic Genome Annotation Pipeline
  ☆366Updated 4 months ago
• Dfam-consortium / RepeatMasker
  RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
  ☆282Updated last week
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆329Updated 7 months ago
• nanoporetech / medaka
  Sequence correction provided by ONT Research
  ☆486Updated 2 months ago
• gpertea / gffread
  GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more
  ☆443Updated 10 months ago
• oushujun / EDTA
  Extensive de-novo TE Annotator
  ☆413Updated last month
• Nextomics / NextDenovo
  Fast and accurate de novo assembler for long reads
  ☆395Updated last year
• wdecoster / nanopack
  An overview of all nanopack tools
  ☆272Updated 2 years ago
• kcleal / gw
  Genome browser and variant annotation
  ☆385Updated 2 weeks ago
• fritzsedlazeck / Sniffles
  Structural variation caller using third generation sequencing
  ☆624Updated last week
• NBISweden / AGAT
  Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/
  ☆538Updated 2 months ago
• ComparativeGenomicsToolkit / cactus
  Official home of genome aligner based upon notion of Cactus graphs
  ☆622Updated this week
• jenniferlu717 / KrakenTools
  KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
  ☆355Updated 3 months ago
• whatshap / whatshap
  Read-based phasing of genomic variants, also called haplotype assembly
  ☆392Updated 5 months ago
• mummer4 / mummer
  Mummer alignment tool
  ☆535Updated 9 months ago
• ACEnglish / truvari
  Structural variant toolkit for VCFs
  ☆386Updated last month
• PacificBiosciences / pbbioconda
  PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.
  ☆282Updated 9 months ago
• Magdoll / cDNA_Cupcake
  Miscellaneous collection of Python and R scripts for processing Iso-Seq data
  ☆274Updated 2 years ago
• philres / ngmlr
  NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…
  ☆305Updated last year
• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆283Updated last year