agshumate / LiftoffLinks
An accurate GFF3/GTF lift over pipeline
☆516Updated 2 years ago
Alternatives and similar repositories for Liftoff
Users that are interested in Liftoff are comparing it to the libraries listed below
Sorting:
- adapter trimmer for Oxford Nanopore reads☆377Updated last year
- Pilon is an automated genome assembly improvement and variant detection tool☆372Updated 3 years ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆442Updated 2 months ago
- TransDecoder source☆300Updated 2 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆546Updated last year
- Tool to plot synteny and structural rearrangements between genomes☆334Updated 8 months ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆243Updated 4 years ago
- Plotting scripts for long read sequencing data☆519Updated 3 weeks ago
- Sequence correction provided by ONT Research☆489Updated 2 weeks ago
- quality filtering tool for long reads☆381Updated 3 months ago
- Eukaryotic Genome Annotation Pipeline☆371Updated 5 months ago
- Official home of genome aligner based upon notion of Cactus graphs☆636Updated last week
- Plot structural variant signals from many BAMs and CRAMs☆557Updated last year
- An overview of all nanopack tools☆273Updated 2 years ago
- Fast and accurate de novo assembler for long reads☆397Updated last year
- Structural variant toolkit for VCFs☆393Updated 3 weeks ago
- Synteny and Rearrangement Identifier☆435Updated 7 months ago
- Structural variation caller using third generation sequencing☆628Updated last week
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆288Updated last week
- the pangenome graph builder☆471Updated 2 weeks ago
- Genome browser and variant annotation☆387Updated last month
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆361Updated 4 months ago
- ☆282Updated 2 months ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆284Updated 10 months ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆306Updated last year
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆272Updated 2 months ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆278Updated 2 years ago
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆327Updated 2 years ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Updated last year
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆375Updated 2 weeks ago