agshumate / LiftoffLinks
An accurate GFF3/GTF lift over pipeline
☆493Updated 2 years ago
Alternatives and similar repositories for Liftoff
Users that are interested in Liftoff are comparing it to the libraries listed below
Sorting:
- TransDecoder source☆296Updated 10 months ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆419Updated 6 months ago
- ☆259Updated this week
- Plot structural variant signals from many BAMs and CRAMs☆544Updated last year
- adapter trimmer for Oxford Nanopore reads☆367Updated last year
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆236Updated 4 years ago
- Pilon is an automated genome assembly improvement and variant detection tool☆367Updated 3 years ago
- Tool to plot synteny and structural rearrangements between genomes☆317Updated 4 months ago
- Fast and accurate de novo assembler for long reads☆390Updated last year
- Plotting scripts for long read sequencing data☆490Updated last week
- Tools for fast and flexible genome assembly scaffolding and improvement☆519Updated last year
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆267Updated last month
- quality filtering tool for long reads☆358Updated last year
- An overview of all nanopack tools☆265Updated 2 years ago
- Mummer alignment tool☆521Updated 6 months ago
- Eukaryotic Genome Annotation Pipeline☆358Updated last month
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆271Updated 6 months ago
- Genome browser and variant annotation☆368Updated 2 weeks ago
- Sequence correction provided by ONT Research☆468Updated 2 months ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆353Updated last month
- the pangenome graph builder☆444Updated this week
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆347Updated this week
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆271Updated last year
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆426Updated 7 months ago
- Structural variation caller using third generation sequencing☆606Updated 3 weeks ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆283Updated 9 months ago
- Extensive de-novo TE Annotator☆394Updated last month
- Synteny and Rearrangement Identifier☆403Updated 3 months ago
- Genome assembly evaluation tool☆451Updated 8 months ago
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆518Updated last week