KamilSJaron / smudgeplot
Inference of ploidy and heterozygosity structure using whole genome sequencing data
☆265Updated last month
Alternatives and similar repositories for smudgeplot:
Users that are interested in smudgeplot are comparing it to the libraries listed below
- An overview of all nanopack tools☆239Updated last year
- Fast and accurately polish the genome generated by long reads.☆220Updated 3 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆318Updated 10 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆276Updated 5 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆179Updated last month
- Filtering and trimming of long read sequencing data☆201Updated 2 years ago
- Fast genome analysis from unassembled short reads☆286Updated last year
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆210Updated this week
- Genome Assembly and Annotation Service code☆211Updated last year
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆248Updated last month
- quality filtering tool for long reads☆326Updated last year
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆137Updated 3 years ago
- VGP repository for the genome assembly working group☆191Updated last year
- ☆204Updated 2 months ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆199Updated 7 months ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 3 years ago
- Tool to plot synteny and structural rearrangements between genomes☆302Updated last week
- Generate an interactive dot plot from mummer or minimap alignments☆200Updated last year
- De-Novo Repeat Discovery Tool☆208Updated 3 months ago
- Quality control for MinION sequencing data☆215Updated 2 years ago
- Pilon is an automated genome assembly improvement and variant detection tool☆357Updated 3 years ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆199Updated 3 weeks ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆160Updated last year
- Long read / genome alignment software☆283Updated 5 months ago
- haplotypic duplication identification tool☆233Updated last year
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆184Updated 10 months ago
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆186Updated 2 months ago
- k-mer based assembly evaluation☆309Updated 9 months ago
- Synteny and Rearrangement Identifier☆374Updated 2 weeks ago
- ☆183Updated 3 weeks ago