π LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
β124Jul 23, 2026Updated last week
Alternatives and similar repositories for LiftOn
Users that are interested in LiftOn are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- π wheeler graph recognition algorithm, visualization and generationβ21Jun 28, 2026Updated last month
- This is the standalone version of the EviAnn pipelineβ176Jun 24, 2026Updated last month
- A genome completeness evaluation tool based on miniprotβ254Updated this week
- Consensus genome annotation using OMAβ32Jan 14, 2026Updated 6 months ago
- Genome mapping and spliced alignment of cDNA or amino acid sequencesβ114Jul 11, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- βοΈ Deep learning-based splice site predictor that improves spliced alignmentsβ61Feb 26, 2025Updated last year
- Gapless, reference-quality Southern Han Chinese genome assembly and annotationβ12Oct 24, 2022Updated 3 years ago
- Detecting multi-genome synteny using minimizer graph mappingβ109Jun 12, 2026Updated last month
- A program for assessing the T2T genome continuity and completenessβ95Feb 28, 2026Updated 5 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)β60Jul 5, 2026Updated 3 weeks ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oβ¦β404Apr 22, 2026Updated 3 months ago
- β45Dec 11, 2025Updated 7 months ago
- An accurate GFF3/GTF lift over pipelineβ547Aug 1, 2023Updated 2 years ago
- πΆπΌπΌ a RPG game modified from a unity 2D game kitβ22Sep 20, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- base-accurate DNA sequence alignments using WFA and mashmap3β220Updated this week
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identificationβ180Jun 23, 2026Updated last month
- Mumemto: multi-MUM and MEM finding across pangenomesβ133Jul 15, 2026Updated 2 weeks ago
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotβ¦β209Nov 23, 2025Updated 8 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formatsβ69May 22, 2021Updated 5 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.β38Apr 23, 2025Updated last year
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C dataβ276Jul 7, 2026Updated 3 weeks ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scβ¦β150Apr 13, 2026Updated 3 months ago
- a python package for automated generation of phylogenetic trees from genbank filesβ24Apr 9, 2026Updated 3 months ago
- Proton VPN Special Offer - Get 70% off β’ AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.β24Nov 18, 2025Updated 8 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discoveryβ68May 26, 2026Updated 2 months ago
- Using Deep Learning to predict gene annotationsβ300Jul 22, 2026Updated last week
- Multi-genome synteny block visualization toolβ63Jul 6, 2026Updated 3 weeks ago
- Unzip assembly graphs with Hi-C data and/or long reads.β29May 7, 2026Updated 2 months ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentationβ205Apr 27, 2026Updated 3 months ago
- Hybrid error correction approach for long reads using overlap graphβ11Sep 26, 2023Updated 2 years ago
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long readsβ107Jun 25, 2026Updated last month
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).β112Jul 23, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive β’ AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Tool for globally phasing diploid assembly graphs with orthogonal dataβ43Nov 25, 2024Updated last year
- k-mer based assembly evaluationβ351Jul 6, 2026Updated 3 weeks ago
- Repeat-aware polishing genomes assembled using HiFi long readsβ105Apr 7, 2026Updated 3 months ago
- High-precision TE Annotatorβ162Dec 4, 2025Updated 7 months ago
- De novo chromosome-level scaffolding and phasing tool using Hi-Cβ30Nov 23, 2025Updated 8 months ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.β213Nov 18, 2022Updated 3 years ago
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.β28Jul 15, 2026Updated 2 weeks ago