Kuanhao-Chao / LiftOnLinks
🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
☆112Updated 3 months ago
Alternatives and similar repositories for LiftOn
Users that are interested in LiftOn are comparing it to the libraries listed below
Sorting:
- A local-haplotagging-based small and structural variant caller☆85Updated this week
- Simple pileup-based variant caller☆92Updated 5 months ago
- A list of software for pangenomics☆131Updated 2 weeks ago
- Pipeline to convert a haploid assembly into diploid☆103Updated 8 months ago
- A program for assessing the T2T genome continuity☆87Updated 3 weeks ago
- Call select base modifications in PacBio HiFi reads☆13Updated 8 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆58Updated 2 years ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- TransposonUltimate - a holistic set of tools for transposon identification☆84Updated 3 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆118Updated 5 months ago
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆44Updated 3 months ago
- ☆66Updated last month
- Application of pan-genome for population☆110Updated 11 months ago
- SRF: Satellite Repeat Finder☆97Updated last year
- ☆141Updated 5 months ago
- k-mer learning materials☆80Updated 7 months ago
- Neural network classification of TE☆96Updated 4 months ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆58Updated 3 weeks ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆113Updated this week
- ☆50Updated 2 weeks ago
- Structural Variant Identification Method using Genome Assemblies☆124Updated 3 years ago
- This is the standalone version of the EviAnn pipeline☆123Updated last week
- Mapping pipeline for data generated using Arima-HiC☆80Updated last year
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆100Updated last week
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- TSEBRA: Transcript Selector for BRAKER☆48Updated 10 months ago
- Collection of tools for the analysis of CpG data☆95Updated 3 months ago
- PacBio BAM toolkit☆46Updated 7 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆68Updated 3 months ago
- Show pangenome graphs in an easy way☆56Updated 2 months ago