π LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
β123Feb 24, 2026Updated last month
Alternatives and similar repositories for LiftOn
Users that are interested in LiftOn are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This is the standalone version of the EviAnn pipelineβ143Mar 13, 2026Updated 2 weeks ago
- π wheeler graph recognition algorithm, visualization and generationβ21Jul 7, 2023Updated 2 years ago
- A genome completeness evaluation tool based on miniprotβ237Sep 18, 2025Updated 6 months ago
- Consensus genome annotation using OMAβ31Jan 14, 2026Updated 2 months ago
- Gapless, reference-quality Southern Han Chinese genome assembly and annotationβ12Oct 24, 2022Updated 3 years ago
- Proton VPN Special Offer - Get 70% off β’ AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Genome mapping and spliced alignment of cDNA or amino acid sequencesβ110Feb 28, 2026Updated last month
- A program for assessing the T2T genome continuityβ92Feb 28, 2026Updated last month
- Mumemto: multi-MUM and MEM finding across pangenomesβ129Updated this week
- An accurate GFF3/GTF lift over pipelineβ531Aug 1, 2023Updated 2 years ago
- base-accurate DNA sequence alignments using WFA and mashmap3β212Mar 20, 2026Updated last week
- βοΈ Deep learning-based splice site predictor that improves spliced alignmentsβ60Feb 26, 2025Updated last year
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identificationβ167Oct 29, 2025Updated 5 months ago
- πΆπΌπΌ a RPG game modified from a unity 2D game kitβ22Sep 20, 2023Updated 2 years ago
- A local-haplotagging-based small and structural variant callerβ100Updated this week
- NordVPN Special Discount Offer β’ AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- β45Dec 11, 2025Updated 3 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formatsβ69May 22, 2021Updated 4 years ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oβ¦β384Mar 11, 2026Updated 2 weeks ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.β35Apr 23, 2025Updated 11 months ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scβ¦β148Jan 27, 2025Updated last year
- Detecting multi-genome synteny using minimizer graph mappingβ104Mar 18, 2026Updated last week
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotβ¦β205Nov 23, 2025Updated 4 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discoveryβ62Mar 12, 2026Updated 2 weeks ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentationβ183Dec 16, 2025Updated 3 months ago
- NordVPN Special Discount Offer β’ AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Unzip assembly graphs with Hi-C data and/or long reads.β27Sep 20, 2024Updated last year
- Hybrid error correction approach for long reads using overlap graphβ11Sep 26, 2023Updated 2 years ago
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C dataβ255Jan 5, 2026Updated 2 months ago
- Repeat-aware polishing genomes assembled using HiFi long readsβ98Nov 12, 2025Updated 4 months ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).β107Jul 23, 2024Updated last year
- High-precision TE Annotatorβ151Dec 4, 2025Updated 3 months ago
- k-mer based assembly evaluationβ341Jun 28, 2024Updated last year
- De novo chromosome-level scaffolding and phasing tool using Hi-Cβ30Nov 23, 2025Updated 4 months ago
- Tool for globally phasing diploid assembly graphs with orthogonal dataβ43Nov 25, 2024Updated last year
- NordVPN Special Discount Offer β’ AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.β209Nov 18, 2022Updated 3 years ago
- assembly evaluation toolβ35May 11, 2022Updated 3 years ago
- β30Mar 3, 2026Updated 3 weeks ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.β15Sep 17, 2025Updated 6 months ago
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flyeβ35Mar 5, 2026Updated 3 weeks ago
- Structural Variant Identification Method using Genome Assembliesβ139Sep 16, 2022Updated 3 years ago
- β151Nov 5, 2025Updated 4 months ago