Alternatives and similar repositories for LiftOn

Users that are interested in LiftOn are comparing it to the libraries listed below

• lh3 / minipileup
  Simple pileup-based variant caller
  ☆95Updated 8 months ago
• DerKevinRiehl / TransposonUltimate
  TransposonUltimate - a holistic set of tools for transposon identification
  ☆85Updated 3 years ago
• yeeus / GCI
  A program for assessing the T2T genome continuity
  ☆92Updated 2 weeks ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆109Updated 11 months ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆120Updated 2 months ago
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆90Updated 2 weeks ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆165Updated 3 weeks ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆59Updated 2 years ago
• epi2me-labs / modbam2bed
  ☆52Updated 3 months ago
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆49Updated last month
• daewoooo / SVbyEye
  ☆144Updated last month
• ArimaGenomics / mapping_pipeline
  Mapping pipeline for data generated using Arima-HiC
  ☆81Updated last year
• kjenike / panagram
  ☆68Updated last week
• PacificBiosciences / jasmine
  Call select base modifications in PacBio HiFi reads
  ☆15Updated last month
• nclark-lab / RERconverge
  Analysis of convergence between organismal traits and DNA/protein sequences
  ☆60Updated last month
• lh3 / srf
  SRF: Satellite Repeat Finder
  ☆101Updated last year
• mrvollger / StainedGlass
  Make colorful identity heatmaps of genomic sequence
  ☆128Updated last year
• LiLabAtVT / DeepTE
  Neural network classification of TE
  ☆97Updated 2 months ago
• starskyzheng / panpop
  Application of pan-genome for population
  ☆116Updated 2 months ago
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆76Updated 4 years ago
• mapleforest / HaploMerger2
  ☆45Updated 9 years ago
• PombertLab / SYNY
  The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.
  ☆49Updated last week
• KamilSJaron / k-mer-approaches-for-biodiversity-genomics
  k-mer learning materials
  ☆81Updated 10 months ago
• qjiangzhao / TEtrimmer
  TEtrimmer: a novel tool to automate manual curation of transposable elements
  ☆109Updated 3 weeks ago
• Maggi-Chen / DeBreak
  Structural variant caller for real-time long-read sequencing data
  ☆61Updated 3 years ago
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆85Updated 4 years ago
• harvardinformatics / GenomeAnnotation
  Best practices and workflow for genome annotation
  ☆79Updated 8 months ago
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆69Updated last month
• EVidenceModeler / EVidenceModeler
  source code for EVM
  ☆119Updated last year
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆101Updated 2 weeks ago