Kuanhao-Chao / LiftOnLinks
🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
☆108Updated last month
Alternatives and similar repositories for LiftOn
Users that are interested in LiftOn are comparing it to the libraries listed below
Sorting:
- Simple pileup-based variant caller☆91Updated 3 months ago
- A list of software for pangenomics☆121Updated 2 weeks ago
- A local-haplotagging-based small and structural variant caller☆78Updated last week
- TransposonUltimate - a holistic set of tools for transposon identification☆84Updated 3 years ago
- A program for assessing the T2T genome continuity☆83Updated last month
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆75Updated this week
- Pipeline to convert a haploid assembly into diploid☆102Updated 6 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆118Updated 3 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆58Updated 2 years ago
- This is the standalone version of the EviAnn pipeline☆109Updated last week
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- ☆49Updated 11 months ago
- k-mer learning materials☆73Updated 5 months ago
- ☆63Updated 2 weeks ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆43Updated last month
- Mapping pipeline for data generated using Arima-HiC☆79Updated last year
- Neural network classification of TE☆92Updated 2 months ago
- Dfam Transposable Element Tools Docker container.☆99Updated last month
- TSEBRA: Transcript Selector for BRAKER☆47Updated 8 months ago
- List of genome assembly tools☆70Updated last week
- A Nextflow workflow to generate lift over files for any pair of genomes☆68Updated last month
- Structural variant caller for real-time long-read sequencing data☆57Updated 2 years ago
- python plotly Circos from VCF☆38Updated last year
- Visualise and analyse nanopore (ONT) raw signals☆119Updated 2 weeks ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆111Updated this week
- ☆134Updated 3 months ago
- Error correction of ONT transcript reads☆58Updated last year
- Analysis of convergence between organismal traits and DNA/protein sequences☆56Updated this week