qjiangzhao / TEtrimmer
TEtrimmer: a novel tool to automate manual curation of transposable elements
☆67Updated 2 weeks ago
Alternatives and similar repositories for TEtrimmer:
Users that are interested in TEtrimmer are comparing it to the libraries listed below
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆86Updated 8 months ago
- High-precision TE Annotator☆105Updated 3 weeks ago
- Application of pan-genome for population☆103Updated 5 months ago
- Neural network classification of TE☆87Updated 2 years ago
- PacBio BAM toolkit☆40Updated last month
- A organelle de novo genome assembly toolkit☆55Updated last month
- Hybrid error correction of long reads using colored de Bruijn graphs☆100Updated 6 months ago
- Collection of tools for the analysis of CpG data☆80Updated last month
- Mapping pipeline for data generated using Arima-HiC☆76Updated 10 months ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆99Updated last week
- SRF: Satellite Repeat Finder☆93Updated last year
- ☆71Updated 2 weeks ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆93Updated last month
- ☆77Updated last month
- tomato graph pangenome☆81Updated 2 years ago
- Detecting multi-genome synteny using minimizer graph mapping☆76Updated 2 months ago
- Evaluating genome assemblies☆88Updated 2 weeks ago
- MCHelper: An automatic tool to curate transposable element libraries☆34Updated 3 months ago
- Annotation helper tool for the manual curation of transposable element consensus sequences☆47Updated 3 weeks ago
- Portable solution to generate genome alignment chains using lastz☆55Updated 5 months ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆58Updated 2 months ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆79Updated 3 years ago
- Show pangenome graphs in an easy way☆55Updated 2 years ago
- Structural Variant Identification Method using Genome Assemblies☆107Updated 2 years ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 4 months ago
- Pipeline to convert a haploid assembly into diploid☆100Updated 2 months ago
- source code for EVM☆109Updated 3 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆92Updated last month
- Constructing a pangenome gene graph☆184Updated 8 months ago
- Best practices and workflow for genome annotation☆74Updated last month