qjiangzhao / TEtrimmer
TEtrimmer: a novel tool to automate manual curation of transposable elements
☆65Updated 3 weeks ago
Alternatives and similar repositories for TEtrimmer:
Users that are interested in TEtrimmer are comparing it to the libraries listed below
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆85Updated 7 months ago
- High-precision TE Annotator☆103Updated last week
- A organelle de novo genome assembly toolkit☆55Updated 2 weeks ago
- PacBio BAM toolkit☆40Updated 2 weeks ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆98Updated last week
- Mapping pipeline for data generated using Arima-HiC☆75Updated 9 months ago
- k-mer learning materials☆68Updated 3 weeks ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆100Updated 5 months ago
- Application of pan-genome for population☆103Updated 4 months ago
- ☆70Updated this week
- ☆76Updated 2 weeks ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆58Updated 2 months ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆91Updated last month
- Structural Variant Identification Method using Genome Assemblies☆102Updated 2 years ago
- Detecting multi-genome synteny using minimizer graph mapping☆76Updated last month
- Evaluating genome assemblies☆86Updated this week
- Annotation helper tool for the manual curation of transposable element consensus sequences☆47Updated last week
- SRF: Satellite Repeat Finder☆92Updated last year
- Portable solution to generate genome alignment chains using lastz☆54Updated 5 months ago
- MCHelper: An automatic tool to curate transposable element libraries☆33Updated 2 months ago
- Neural network classification of TE☆87Updated 2 years ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 4 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆90Updated 2 weeks ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆78Updated 3 years ago
- Large genome reassembly based on Hi-C data, continuation of GRAAL☆40Updated 11 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆54Updated last year
- Pipeline to convert a haploid assembly into diploid☆99Updated last month
- A program for assessing the T2T genome continuity☆69Updated last week
- tomato graph pangenome☆81Updated 2 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆71Updated 3 years ago