Alternatives and similar repositories for TEtrimmer:

Users that are interested in TEtrimmer are comparing it to the libraries listed below

• sheinasim-USDA / HiFiAdapterFilt
  Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
  ☆85Updated 6 months ago
• CSU-KangHu / HiTE
  High-precision TE Annotator
  ☆92Updated this week
• PacificBiosciences / pbtk
  PacBio BAM toolkit
  ☆39Updated 3 months ago
• hillerlab / make_lastz_chains
  Portable solution to generate genome alignment chains using lastz
  ☆54Updated 4 months ago
• bcgsc / ntSynt
  Detecting multi-genome synteny using minimizer graph mapping
  ☆77Updated last month
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆73Updated 2 months ago
• c-zhou / oatk
  A organelle de novo genome assembly toolkit
  ☆54Updated 2 months ago
• ArimaGenomics / mapping_pipeline
  Mapping pipeline for data generated using Arima-HiC
  ☆75Updated 9 months ago
• LiLabAtVT / DeepTE
  Neural network classification of TE
  ☆87Updated 2 years ago
• JiaoLaboratory / CRAQ
  Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement
  ☆58Updated last month
• starskyzheng / panpop
  Application of pan-genome for population
  ☆102Updated 4 months ago
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆100Updated 4 months ago
• daewoooo / SVbyEye
  ☆76Updated 4 months ago
• DessimozLab / OMArk
  ☆69Updated 2 weeks ago
• clemgoub / TE-Aid
  Annotation helper tool for the manual curation of transposable element consensus sequences
  ☆47Updated 8 months ago
• marschall-lab / panacus
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
  ☆94Updated this week
• zhangrengang / TEsorter
  TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes
  ☆90Updated last week
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆78Updated 3 years ago
• eldariont / svim-asm
  Structural Variant Identification Method using Genome Assemblies
  ☆100Updated 2 years ago
• KamilSJaron / k-mer-approaches-for-biodiversity-genomics
  k-mer learning materials
  ☆62Updated last week
• vgl-hub / gfastats
  A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…
  ☆98Updated last week
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆47Updated 3 months ago
• YaoZhou89 / TGG
  tomato graph pangenome
  ☆79Updated 2 years ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆52Updated last year
• GonzalezLab / MCHelper
  MCHelper: An automatic tool to curate transposable element libraries
  ☆33Updated 2 months ago
• lh3 / srf
  SRF: Satellite Repeat Finder
  ☆91Updated last year
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆71Updated 3 years ago
• phasegenomics / juicebox_scripts
  A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats
  ☆65Updated 3 years ago
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆77Updated 2 weeks ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆96Updated 3 weeks ago