TEtrimmer: a novel tool to automate manual curation of transposable elements
☆115Jun 24, 2026Updated 3 weeks ago
Alternatives and similar repositories for TEtrimmer
Users that are interested in TEtrimmer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MCHelper: An automatic tool to curate transposable element libraries☆50May 6, 2026Updated 2 months ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆34Jul 13, 2026Updated last week
- ☆11Updated this week
- Annotation helper tool for the manual curation of transposable element consensus sequences☆55Mar 5, 2025Updated last year
- High-precision TE Annotator☆161Dec 4, 2025Updated 7 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Identification of transposable element families from pangenome polymorphisms☆57Jun 8, 2026Updated last month
- Earl Grey: A fully automated TE curation and annotation pipeline☆220Updated this week
- Extensive de-novo TE Annotator☆461Updated this week
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆268Jul 11, 2026Updated last week
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆114Nov 17, 2025Updated 8 months ago
- Make colorful identity heatmaps of genomic sequence☆139May 24, 2024Updated 2 years ago
- Domain based annotation of transposable elements☆23Jul 14, 2026Updated last week
- Using Deep Learning to predict gene annotations☆299Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Snakemake pipeline to analyze transposable element 'omics data.☆33Jul 4, 2026Updated 2 weeks ago
- An R package to detect, classify, and visualize genome rearrangements☆15Aug 4, 2020Updated 5 years ago
- This is the standalone version of the EviAnn pipeline☆175Jun 24, 2026Updated 3 weeks ago
- Pairwise whole genome aligner☆243Updated this week
- A comprehensive telomere annotation tool for genome assemblies and graphs.☆16Jul 8, 2026Updated last week
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆58Jul 19, 2025Updated last year
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆34Jan 3, 2022Updated 4 years ago
- A genome completeness evaluation tool based on miniprot☆254Updated this week
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆275Jul 7, 2026Updated 2 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A tool for quick and accurate calculation of syntenic diversity.☆45Sep 22, 2025Updated 9 months ago
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆57Jun 17, 2026Updated last month
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆87May 25, 2021Updated 5 years ago
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆196Oct 15, 2025Updated 9 months ago
- ☆196Feb 10, 2026Updated 5 months ago
- Inpactor2: LTR retrotransposon detector and classificator using Deep Learning☆30Jun 17, 2025Updated last year
- ☆162Apr 13, 2026Updated 3 months ago
- A program for assessing the T2T genome continuity and completeness☆95Feb 28, 2026Updated 4 months ago
- Pangenome-based genome inference☆175Jun 15, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Multi-genome synteny block visualization tool☆63Jul 6, 2026Updated 2 weeks ago
- A list of software for pangenomics☆196Jul 14, 2026Updated last week
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆217Jun 30, 2026Updated 3 weeks ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆26Aug 20, 2020Updated 5 years ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆149Apr 13, 2026Updated 3 months ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆465Jun 17, 2026Updated last month
- ☆13Nov 15, 2017Updated 8 years ago