qjiangzhao / TEtrimmerLinks
TEtrimmer: a novel tool to automate manual curation of transposable elements
☆106Updated this week
Alternatives and similar repositories for TEtrimmer
Users that are interested in TEtrimmer are comparing it to the libraries listed below
Sorting:
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆84Updated 4 years ago
- This is the standalone version of the EviAnn pipeline☆130Updated last week
- High-precision TE Annotator☆140Updated last week
- A organelle de novo genome assembly toolkit☆70Updated 9 months ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆100Updated 3 weeks ago
- Neural network classification of TE☆96Updated 2 months ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆74Updated last week
- ☆143Updated last month
- NLR-Annotator upload☆74Updated 2 years ago
- Structural Variant Identification Method using Genome Assemblies☆128Updated 3 years ago
- A list of software for pangenomics☆162Updated last week
- ☆84Updated last week
- Application of pan-genome for population☆115Updated last month
- Mapping pipeline for data generated using Arima-HiC☆81Updated last year
- ☆83Updated last year
- Collection of tools for the analysis of CpG data☆99Updated 5 months ago
- Pipeline to convert a haploid assembly into diploid☆108Updated 10 months ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆53Updated 5 years ago
- source code for EVM☆119Updated last year
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆115Updated 3 weeks ago
- Identify and find telomeres, or telomeric repeats in a genome.☆150Updated 2 weeks ago
- SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …☆91Updated 2 weeks ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆111Updated 3 months ago
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆88Updated last year
- ☆118Updated 2 months ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆97Updated last year
- Make colorful identity heatmaps of genomic sequence☆125Updated last year
- TSEBRA: Transcript Selector for BRAKER☆49Updated 3 weeks ago
- Reference-free profiling of polyploid genomes☆135Updated 2 months ago
- tomato graph pangenome☆85Updated 2 years ago