Long-reads Gap-free Chromosome-scale Assembler
☆79Mar 21, 2023Updated 3 years ago
Alternatives and similar repositories for GALA
Users that are interested in GALA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- A tool for recovering synteny blocks from multiple alignment☆34Oct 18, 2021Updated 4 years ago
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- This is the standalone version of the EviAnn pipeline☆183Aug 11, 2026Updated 2 weeks ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Haplotype aware de novo assembly of diploid genome from long reads☆54Mar 16, 2022Updated 4 years ago
- ☆78Jun 12, 2020Updated 6 years ago
- An algorithm for centromere assembly using long error-prone reads☆25May 25, 2021Updated 5 years ago
- ☆42May 19, 2025Updated last year
- ☆41Jun 8, 2023Updated 3 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Nov 22, 2019Updated 6 years ago
- Synteny and Rearrangement Identifier☆485Jul 1, 2026Updated last month
- k-mer based assembly evaluation☆354Jul 6, 2026Updated last month
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Apr 8, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- haplotypic duplication identification tool☆294Oct 30, 2025Updated 10 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆576Feb 14, 2024Updated 2 years ago
- Chromosome-level scaffolding using multiple references☆170Sep 8, 2024Updated last year
- De novo annotation of young retrotransposons☆46Apr 24, 2026Updated 4 months ago
- ☆78Dec 4, 2019Updated 6 years ago
- ☆45Dec 11, 2025Updated 8 months ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆26Oct 24, 2025Updated 10 months ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆32Jul 13, 2026Updated last month
- ☆33Apr 7, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- R package to draw syntenic plots in 3 different styles☆47Feb 2, 2026Updated 6 months ago
- The complete sequence of a Chinese individual☆14Oct 8, 2024Updated last year
- ☆15Jan 19, 2022Updated 4 years ago
- parallelLastz: Running Lastz in parallel☆18Sep 13, 2024Updated last year
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 3 years ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆113Nov 17, 2025Updated 9 months ago
- Repeat-aware polishing genomes assembled using HiFi long reads☆105Apr 7, 2026Updated 4 months ago
- ☆261Jan 24, 2025Updated last year
- A Hi-C scaffolding method☆22Dec 22, 2021Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Close assembly gaps using long-reads at high accuracy.☆52Feb 20, 2024Updated 2 years ago
- An accurate GFF3/GTF lift over pipeline☆551Aug 1, 2023Updated 3 years ago
- Identify and find telomeres, or telomeric repeats in a genome.☆174Nov 24, 2025Updated 9 months ago
- ☆32Mar 3, 2026Updated 5 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆36Jan 3, 2022Updated 4 years ago
- Reference-agnostic Representation and Visualization of Pan-genomes☆19Sep 16, 2021Updated 4 years ago
- ☆59Dec 12, 2023Updated 2 years ago