Alternatives and similar repositories for locityper

Users that are interested in locityper are comparing it to the libraries listed below

• marschall-lab / gaftools
  General purpose utility related to GAF files
  ☆29Updated last month
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆27Updated last year
• codialab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated 4 months ago
• asylvz / SVarp
  Phased structural variant discovery in pangenomes
  ☆36Updated last year
• w-gao / pgv
  A web-based, interactive pangenome visualization tool
  ☆21Updated 2 years ago
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆39Updated last year
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆22Updated last year
• rchikhi / 2022-pangenome-graphs-intro
  ☆28Updated last year
• codeatcg / VRPG
  an interactive visualization and interpretation framework of reference-projected pangenome graphs
  ☆37Updated 7 months ago
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆32Updated 4 years ago
• ablab / stringdecomposer
  Tool for decomposition centromeric assemblies and long reads into monomers
  ☆35Updated 3 years ago
• MoinSebi / gfa2bin
  ☆25Updated 2 months ago
• mktle / colorSV
  somatic SV calling on matched tumor-normal co-assembly graphs
  ☆22Updated last year
• lh3 / minisv
  Lightweight mosaic/somatic SV caller for long reads (WIP)
  ☆29Updated 10 months ago
• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 3 years ago
• fawaz-dabbaghieh / bubble_gun
  ☆40Updated 2 months ago
• human-pangenomics / hprc-tutorials
  ☆18Updated last year
• thegenemyers / MERQURY.FK
  FastK based version of Merqury
  ☆28Updated 2 weeks ago
• ACEnglish / kanpig
  Kmer Analysis of Pileups for Genotyping
  ☆32Updated this week
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆24Updated 3 months ago
• marbl / rukki
  Extracting paths from assembly graphs
  ☆24Updated last year
• marbl / training
  Genome Assembly 102
  ☆14Updated 5 months ago
• davidebolo1993 / cosigt
  COsine-based SImilarity Genotyper using pangenomes
  ☆21Updated last week
• maickrau / ribotin
  ☆36Updated 2 months ago
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆36Updated 2 months ago
• pangenome / pgge
  the pangenome graph evaluator
  ☆28Updated 4 years ago
• ekg / edyeet
  base-accurate DNA sequence alignments using edlib and mashmap2
  ☆32Updated 4 years ago
• at-cg / minichain
  Long-read aligner to pangenome graphs
  ☆27Updated last year
• hitbc / gcSV
  ☆21Updated 7 months ago
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆26Updated 4 months ago