tprodanov / locityperLinks
Targeted genotyper for complex polymorphic genes
☆20Updated 2 weeks ago
Alternatives and similar repositories for locityper
Users that are interested in locityper are comparing it to the libraries listed below
Sorting:
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆28Updated 8 months ago
- General purpose utility related to GAF files☆28Updated last week
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated 10 months ago
- ☆35Updated 2 weeks ago
- ☆17Updated last year
- ☆28Updated 8 months ago
- ☆16Updated 3 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 6 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last week
- Phased structural variant discovery in pangenomes☆34Updated last year
- SV calling for diploid assemblies☆27Updated last year
- Extracting paths from assembly graphs☆23Updated last year
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- convert variation graph alignments to coverage maps over nodes☆24Updated 4 months ago
- ☆24Updated 6 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated 3 weeks ago
- Improved Phased Assembler☆28Updated 3 years ago
- Programs implementing the trio-binning genome assembly method☆19Updated last year
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆36Updated 3 months ago
- Very simple and configurable all-in-one dotplot program☆13Updated 2 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated 2 years ago
- Kmer Analysis of Pileups for Genotyping☆29Updated last month
- FastK based version of Merqury☆25Updated last week
- ☆27Updated last year
- A web-based, interactive pangenome visualization tool☆21Updated 2 years ago
- ☆21Updated 3 months ago
- ☆30Updated 5 years ago
- ☆32Updated 2 years ago
- ☆23Updated 9 months ago