Targeted genotyper for complex polymorphic genes
☆50Oct 30, 2026Updated this week
Alternatives and similar repositories for locityper
Users that are interested in locityper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Genotyping of paralog specific gene types☆23Aug 28, 2026Updated 2 months ago
- Variant Calling for the HPRC2☆20May 26, 2026Updated 5 months ago
- Genotyping of copy number sensitive allele-specific haplotypes☆29Aug 28, 2026Updated 2 months ago
- online variation graph induction☆12Oct 21, 2025Updated last year
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆120Jun 6, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Pangenome graph-based genome inference☆14Jul 24, 2025Updated last year
- Copy number estimation and variant calling for duplicated genes using WGS.☆41Apr 29, 2026Updated 6 months ago
- COsine SImilarity-based Genotyper using pangenomes☆40Oct 12, 2026Updated 3 weeks ago
- ☆102Apr 22, 2024Updated 2 years ago
- Parakit is a tool to analyze the RCCX module, which contain the CYP21A2 gene, using long sequencing reads.☆18Oct 26, 2026Updated last week
- Pangenome-based genome inference☆184Oct 26, 2026Updated last week
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆32Nov 25, 2024Updated last year
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆37Aug 18, 2025Updated last year
- KaryoScope: rapid, alignment-free sequence annotation for the pangenome era☆29Oct 21, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Genome Assembly 102☆19Apr 23, 2025Updated last year
- A tool for pangenome graph-based phased diploid genome inference.☆10Sep 19, 2026Updated last month
- Methylation analysis pipeline for genome graph☆17May 25, 2025Updated last year
- ☆12Jun 15, 2026Updated 4 months ago
- ☆25Sep 22, 2026Updated last month
- 🌳 Scalable ancestry from genomic data☆15Updated this week
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆59Mar 7, 2025Updated last year
- Python package for comparing genome assemblies and read data to the diploid Q100 benchmark☆21Oct 8, 2026Updated 3 weeks ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆140Sep 8, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆149Oct 9, 2026Updated 3 weeks ago
- rust tool to choose the best read alignment between haploids to a diploid reference genome☆21Oct 20, 2026Updated last week
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆31Sep 21, 2024Updated 2 years ago
- Misassembly Identifier☆29Updated this week
- VNTR annotation using motif selection☆44Oct 23, 2026Updated last week
- General purpose utility related to GAF files☆38Aug 6, 2026Updated 2 months ago
- Tandem repeat genotyping with long reads☆41Sep 23, 2025Updated last year
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 6 months ago
- A multiscale pangenome browser☆36Jul 18, 2026Updated 3 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Immuological gene typing and annotation for genome assembly☆42Mar 13, 2025Updated last year
- ☆51Jun 27, 2026Updated 4 months ago
- ☆13Dec 10, 2025Updated 10 months ago
- pangenome alignment, implicit/explicit graph, and variants for human pangenome project release 2☆24Sep 9, 2026Updated last month
- Graph Variant Benchmarking for the HPRC2☆11May 26, 2026Updated 5 months ago
- A toolkit for exploring regions of variation in pangenomes☆15Jun 12, 2026Updated 4 months ago
- ☆44Jan 14, 2026Updated 9 months ago