Easy genomic regions for short-read variant calling
☆46Sep 10, 2025Updated 7 months ago
Alternatives and similar repositories for panmask
Users that are interested in panmask are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆21Mar 24, 2026Updated 3 weeks ago
- Targeted genotyper for complex polymorphic genes☆38Apr 1, 2026Updated 2 weeks ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆32Jun 12, 2025Updated 10 months ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 5 months ago
- ☆13May 27, 2025Updated 10 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆36May 14, 2025Updated 11 months ago
- Constructing a pangenome gene graph☆206Aug 11, 2025Updated 8 months ago
- HitSV: Maximizing discovery of structural variants across sequencing technologies☆25Updated this week
- ☆102Apr 22, 2024Updated last year
- A tool for sniffing out the differences in vari-Ants☆40Apr 7, 2026Updated last week
- Kmer Analysis of Pileups for Genotyping☆38Mar 6, 2026Updated last month
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆103Apr 8, 2026Updated last week
- Genotyping of copy number sensitive allele-specific haplotypes☆28Nov 6, 2025Updated 5 months ago
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Sep 21, 2024Updated last year
- ☆15Jun 29, 2021Updated 4 years ago
- expressions on VCFs☆91Mar 17, 2026Updated 3 weeks ago
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 4 years ago
- longcallR is a tool for SNP calling, haplotype phasing, and allele-specific analysis with long-read RNA-seq data.☆83Apr 3, 2026Updated last week
- ☆23Sep 9, 2025Updated 7 months ago
- ☆18Jan 29, 2025Updated last year
- 🧬 High-performance VCF file parser and reformatter with VEP annotation support. Converts complex VCF files to analyzable TSV format …☆45Aug 15, 2025Updated 7 months ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆73Nov 4, 2025Updated 5 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆37May 29, 2025Updated 10 months ago
- add true-negative SVs from a population callset to a truth-set.☆14Jun 17, 2022Updated 3 years ago
- BWT construction and search☆127Jan 14, 2026Updated 3 months ago
- Tools for working with agp files☆19Jun 26, 2025Updated 9 months ago
- Immuological gene typing and annotation for genome assembly☆38Mar 13, 2025Updated last year
- ☆47Mar 19, 2026Updated 3 weeks ago
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- ☆38Oct 6, 2025Updated 6 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆39Feb 22, 2023Updated 3 years ago
- Phased structural variant discovery in pangenomes☆41Apr 3, 2026Updated last week
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆59Jan 7, 2026Updated 3 months ago
- vcfdist: Accurately benchmarking phased variant calls☆85Feb 23, 2026Updated last month
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Apr 21, 2023Updated 2 years ago
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- implicit pangenome graph☆98Updated this week