lh3 / panmaskLinks
Easy genomic regions for short-read variant calling
☆45Updated 3 months ago
Alternatives and similar repositories for panmask
Users that are interested in panmask are comparing it to the libraries listed below
Sorting:
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆38Updated 7 months ago
- Kmer Analysis of Pileups for Genotyping☆34Updated this week
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆46Updated 3 months ago
- ☆25Updated 7 months ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆65Updated last month
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Population-wide Deletion Calling☆35Updated 7 months ago
- Immuological gene typing and annotation for genome assembly☆38Updated 8 months ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆51Updated 9 months ago
- a lexicographically-based GTF/GFF sorter☆35Updated 7 months ago
- A battery of methylation tools for PacBio HiFi reads☆44Updated last week
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- Tumour-only somatic mutation calling using long reads☆28Updated last year
- ☆21Updated 9 months ago
- Structural variant (SV) analysis tools☆39Updated last year
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆52Updated 9 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated 3 weeks ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- ☆18Updated last year
- Genome browser hub for the T2T genomes and resources☆25Updated 2 months ago
- Functions to compare a SV call sets against a truth set.☆30Updated 5 months ago
- Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome☆82Updated 2 weeks ago
- Variant annotation and merging pipeline☆40Updated 4 months ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆39Updated last week
- ☆26Updated 3 months ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆30Updated last year
- Genealogical Estimation of Variant Age (GEVA)☆31Updated 4 years ago