Easy genomic regions for short-read variant calling
☆46Sep 10, 2025Updated 9 months ago
Alternatives and similar repositories for panmask
Users that are interested in panmask are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆21May 17, 2026Updated 3 weeks ago
- Variant Calling for the HPRC2☆16May 26, 2026Updated 2 weeks ago
- Targeted genotyper for complex polymorphic genes☆42Updated this week
- use variant nesting information to flter overlapping sites from vg deconstruct output☆33Jun 12, 2025Updated last year
- ☆13May 27, 2025Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 7 months ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated last month
- Constructing a pangenome gene graph☆207Aug 11, 2025Updated 10 months ago
- HitSV: Maximizing discovery of structural variants across sequencing technologies☆26Apr 9, 2026Updated 2 months ago
- ☆101Apr 22, 2024Updated 2 years ago
- A tool for sniffing out the differences in vari-Ants☆41Apr 7, 2026Updated 2 months ago
- Kmer Analysis of Pileups for Genotyping☆40Mar 6, 2026Updated 3 months ago
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆104Apr 8, 2026Updated 2 months ago
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Genotyping of copy number sensitive allele-specific haplotypes☆28May 20, 2026Updated 3 weeks ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Sep 21, 2024Updated last year
- ☆15Jun 29, 2021Updated 4 years ago
- expressions on VCFs☆92Mar 17, 2026Updated 2 months ago
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 5 years ago
- longcallR is a tool for SNP calling, haplotype phasing, and allele-specific analysis with long-read RNA-seq data.☆92Apr 16, 2026Updated last month
- ☆23Updated this week
- ☆18Jan 29, 2025Updated last year
- 🧬 High-performance VCF file parser and reformatter with VEP annotation support. Converts complex VCF files to analyzable TSV format …☆45Aug 15, 2025Updated 9 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Joint structural variant and copy number variant caller for HiFi sequencing data☆76Nov 4, 2025Updated 7 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆40May 4, 2026Updated last month
- BWT construction and search☆127Jan 14, 2026Updated 5 months ago
- add true-negative SVs from a population callset to a truth-set.☆14Jun 17, 2022Updated 3 years ago
- Immuological gene typing and annotation for genome assembly☆39Mar 13, 2025Updated last year
- Tools for working with agp files☆19Jun 26, 2025Updated 11 months ago
- ☆49May 28, 2026Updated 2 weeks ago
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆41Oct 6, 2025Updated 8 months ago
- ☆39Feb 22, 2023Updated 3 years ago
- Phased structural variant discovery in pangenomes☆42Apr 20, 2026Updated last month
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆59Jan 7, 2026Updated 5 months ago
- vcfdist: Accurately benchmarking phased variant calls☆87Feb 23, 2026Updated 3 months ago
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Apr 21, 2023Updated 3 years ago
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year