lh3 / panmask
Easy genomic regions for short-read variant calling
☆12Updated last month
Alternatives and similar repositories for panmask:
Users that are interested in panmask are comparing it to the libraries listed below
- somatic SV calling on matched tumor-normal co-assembly graphs☆20Updated 8 months ago
- Variant annotation and merging pipeline☆33Updated 2 weeks ago
- SV calling for diploid assemblies☆26Updated last year
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Updated 6 months ago
- ☆16Updated last year
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆39Updated 4 months ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆25Updated last month
- Scripts to reproduce TrioBinning manuscript☆17Updated 5 years ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆35Updated 4 months ago
- ☆17Updated last month
- Kmer Analysis of Pileups for Genotyping☆27Updated last week
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 2 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- ☆35Updated last year
- ☆32Updated this week
- VNTR annotation using motif selection☆32Updated this week
- ☆30Updated 5 years ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- ☆29Updated 8 months ago
- ☆28Updated 8 months ago
- Working space for the GIAB TR benchmarking project☆21Updated 5 months ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 2 years ago
- A long-read analysis toolbox for cancer and population genomics☆22Updated 2 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆28Updated 4 months ago
- Programs implementing the trio-binning genome assembly method☆19Updated last year
- Tumour-only somatic mutation calling using long reads☆26Updated 5 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last month
- Improved Phased Assembler☆28Updated 3 years ago