lh3 / panmaskLinks
Easy genomic regions for short-read variant calling
☆13Updated 3 months ago
Alternatives and similar repositories for panmask
Users that are interested in panmask are comparing it to the libraries listed below
Sorting:
- Variant annotation and merging pipeline☆34Updated this week
- ☆17Updated last year
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated 10 months ago
- Tumour-only somatic mutation calling using long reads☆26Updated 7 months ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆28Updated 8 months ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆25Updated last month
- ☆21Updated 3 months ago
- ☆35Updated 2 weeks ago
- A gene fusion caller for long-read transcriptome sequencing data.☆18Updated last year
- SV calling for diploid assemblies☆27Updated last year
- ☆18Updated last month
- A Nextflow workflow to generate lift over files for any pair of genomes☆65Updated 2 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated 3 weeks ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆37Updated 11 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆35Updated this week
- Tumor-normal variant calling workflow using HiFi reads☆20Updated last week
- Kmer Analysis of Pileups for Genotyping☆29Updated last month
- Tool for globally phasing diploid assembly graphs with orthogonal data☆40Updated 6 months ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆42Updated 7 months ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆28Updated last year
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 5 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 11 months ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 2 years ago
- Scripts to reproduce TrioBinning manuscript☆17Updated 5 years ago
- a lexicographically-based GTF/GFF sorter☆34Updated last month
- Compute N50/NG50 and auN/auNG☆32Updated last year
- VNTR annotation using motif selection☆35Updated this week
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago