DecodeGenetics / LRcallerLinks
☆16Updated 3 years ago
Alternatives and similar repositories for LRcaller
Users that are interested in LRcaller are comparing it to the libraries listed below
Sorting:
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- recompute GFA link overlaps☆25Updated 2 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated 2 years ago
- Very simple and configurable all-in-one dotplot program☆13Updated 2 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 11 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆28Updated 8 months ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆17Updated 7 months ago
- ☆10Updated 4 years ago
- De-novo Assembly Structural Variant Caller☆13Updated 8 years ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Updated 2 years ago
- Targeted genotyper for complex polymorphic genes☆20Updated 2 weeks ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Compare different genome alignment tools using a wide range of genomes with different complexities.☆13Updated 2 years ago
- ☆17Updated 4 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 2 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Convert HAL to VG☆22Updated 9 months ago
- General purpose utility related to GAF files☆28Updated last week
- ☆24Updated 6 months ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated 11 months ago
- ☆14Updated last year
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 5 months ago
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- ☆32Updated 2 years ago
- Phasing reads with secondary alignments☆18Updated 6 months ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- Jupyter Notebooks Using PGR-TK for various human pangenome analysis tasks☆15Updated 2 years ago
- ☆15Updated 4 years ago