DecodeGenetics / LRcaller
☆16Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for LRcaller
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- recompute GFA link overlaps☆25Updated 2 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆13Updated last year
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 6 months ago
- ☆10Updated 4 years ago
- Method to optimally select samples for validation and resequencing☆26Updated 3 years ago
- Very simple and configurable all-in-one dotplot program☆12Updated last year
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- De-novo Assembly Structural Variant Caller☆13Updated 8 years ago
- Identification of segmental duplications in the genome☆26Updated 2 years ago
- A module for improving the insertion sequences of structural variant calls☆29Updated 3 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆23Updated 4 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆25Updated last month
- pangenome analyses for complete genomes of great apes (and gibbon)☆16Updated 3 weeks ago
- Kmer Analysis of Pileups for Genotyping☆18Updated last week
- A long-read analysis toolbox for cancer and population genomics☆20Updated 7 months ago
- Compare different genome alignment tools using a wide range of genomes with different complexities.☆13Updated last year
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆19Updated 11 months ago
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆10Updated 8 months ago
- Convert HAL to VG☆21Updated 2 months ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated 7 months ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆11Updated last year
- Programs implementing the trio-binning genome assembly method☆19Updated 11 months ago
- Scaffolding with Ultralong Reads☆14Updated 3 years ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Updated last year
- Hidden Markov Model based Copy number caller☆20Updated 2 weeks ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆16Updated 4 months ago
- ☆16Updated 3 years ago
- Scaffolding with assembly likelihood optimization☆20Updated 3 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 3 years ago