gymrek-lab / LongTRLinks
Tandem repeat genotyping with long reads
☆30Updated 4 months ago
Alternatives and similar repositories for LongTR
Users that are interested in LongTR are comparing it to the libraries listed below
Sorting:
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- A module for improving the insertion sequences of structural variant calls☆31Updated 4 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 3 months ago
- Very simple and configurable all-in-one dotplot program☆14Updated 2 years ago
- Kmer Analysis of Pileups for Genotyping☆32Updated 2 weeks ago
- Phasing reads with secondary alignments☆20Updated 9 months ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆29Updated 9 months ago
- recompute GFA link overlaps☆25Updated 3 years ago
- ☆18Updated last year
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 9 months ago
- ☆21Updated 6 months ago
- Convert HAL to VG☆22Updated last year
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆32Updated 4 months ago
- De novo tandem repeat calling from PacBio HiFi data☆18Updated 3 months ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago
- COsine-based SImilarity Genotyper using pangenomes☆21Updated this week
- Improved Phased Assembler☆28Updated 3 years ago
- SV calling for diploid assemblies☆28Updated last year
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated last year
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year
- Genome Assembly 102☆15Updated 4 months ago
- ☆28Updated last year
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- Differential k-mer analysis☆37Updated last year
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- FastK based version of Merqury☆28Updated 3 months ago
- convert PAF format to CHAIN format☆32Updated 4 months ago