Alternatives and similar repositories for phasing_T2T

Users that are interested in phasing_T2T are comparing it to the libraries listed below

• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆46Updated 7 months ago
• christopher-vollmers / Mandalorion
  Pipeline to identify isoforms from full-length cDNA sequencing data
  ☆26Updated 4 months ago
• alisi1989 / RFMIX2-Pipeline-to-plot
  Here we present a method to plot the outputs of RFMIX version 2
  ☆31Updated last year
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆54Updated 5 years ago
• Augroup / miniQuant
  Improving gene isoform quantification with miniQuant
  ☆32Updated 3 weeks ago
• PMBio / pycoMeth
  DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets
  ☆30Updated 2 years ago
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆69Updated 2 months ago
• rrazaghi / modbamtools
  Set of tools to manipulate and visualize modified base bam files
  ☆59Updated 3 years ago
• shohei-kojima / MEGAnE
  MEGAnE
  ☆33Updated 2 years ago
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆42Updated 6 months ago
• treangenlab / methphaser
  MethPhaser: methylation-based haplotype phasing of human genomes
  ☆53Updated 11 months ago
• MeHelmy / princess
  ☆84Updated 11 months ago
• LappalainenLab / lorals
  ☆38Updated 2 years ago
• Shians / NanoMethViz
  ☆32Updated 4 months ago
• Popgen48 / scalepopgen
  ☆26Updated last year
• ConesaLab / SQANTI
  ☆14Updated 2 years ago
• huangnengCSU / longcallR
  LongcallR is a SNP caller for single molecule long-read RNA-seq data
  ☆72Updated last month
• PacificBiosciences / HiFiCNV
  Copy number variant caller and depth visualization utility for PacBio HiFi reads
  ☆47Updated last year
• mortazavilab / cerberus
  ☆20Updated last week
• zeeev / mergeSVcallers
  heuristics to merge structural variant calls in VCF format.
  ☆38Updated 9 years ago
• Rosemeis / HaploNet
  Haplotype and population structure inference using neural networks.
  ☆28Updated last year
• fritzsedlazeck / parliament2
  Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
  ☆48Updated 5 years ago
• alejandrogzi / gtfsort
  a lexicographically-based GTF/GFF sorter
  ☆38Updated 9 months ago
• BGI-shenzhen / BamDeal
  BamDeal: a comprehensive toolkit for bam manipulation
  ☆54Updated 3 years ago
• lh3 / panmask
  Easy genomic regions for short-read variant calling
  ☆45Updated 5 months ago
• fiberseq / FIRE
  A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.
  ☆28Updated 2 months ago
• farhangus / Sniffles2_plot
  ☆33Updated last year
• FAANG / analysis-TAGADA
  GENE-SWitCH project RNA-Seq analysis pipeline
  ☆29Updated 11 months ago
• mchowdh200 / samplot-ml
  ☆22Updated 4 years ago
• DrosophilaGenomeEvolution / TrEMOLO
  Transposable Elements MOvement detection using LOng reads
  ☆25Updated 6 months ago